Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 3.3e-75 285.0 152 100.0
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 2.0e-32 142.9 152 61.8
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 4.0e-20 102.1 140 45.7
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.2e-19 100.5 153 49.0
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.0e-16 89.7 134 36.6
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 4.5e-16 88.6 129 43.4
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 5.9e-16 88.2 132 40.9
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 1.1e-14 84.0 134 41.0
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.1e-14 84.0 132 39.4
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 3.3e-14 82.4 146 37.0
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 9.5e-14 80.9 133 39.1
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 9.5e-14 80.9 128 36.7
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 1.2e-13 80.5 148 36.5
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 1.2e-13 80.5 135 38.5
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.6e-13 80.1 136 36.8
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 2.1e-13 79.7 146 39.0
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.1e-13 79.7 130 41.5
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 4.7e-13 78.6 128 37.5
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 6.1e-13 78.2 150 36.0
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 6.1e-13 78.2 143 39.2
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.0e-12 77.4 138 37.7
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.0e-12 77.4 138 37.7
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 1.0e-12 77.4 133 36.8
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 1.8e-12 76.6 142 38.7
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 1.8e-12 76.6 145 35.2
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 1.8e-12 76.6 144 35.4
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 2.3e-12 76.3 147 34.7
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.0e-12 75.9 148 35.1
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 3.0e-12 75.9 133 38.3
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 3.0e-12 75.9 132 38.6
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 4.0e-12 75.5 133 34.6
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 4.0e-12 75.5 147 36.7
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 4.0e-12 75.5 131 37.4
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 6.8e-12 74.7 134 39.6
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.9e-12 74.3 136 36.8
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 1.2e-11 73.9 134 35.8
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.2e-11 73.9 150 36.7
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.2e-11 73.9 134 35.8
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 1.5e-11 73.6 132 37.1
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 1.5e-11 73.6 135 37.8
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 2.0e-11 73.2 129 37.2
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.0e-11 73.2 136 37.5
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 2.6e-11 72.8 130 36.2
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 3.4e-11 72.4 137 35.8
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 4.4e-11 72.0 151 35.8
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 4.4e-11 72.0 133 35.3
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 7.5e-11 71.2 138 34.1
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 7.5e-11 71.2 130 37.7
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.3e-10 70.5 130 37.7
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.2e-10 69.7 149 33.6
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 2.2e-10 69.7 138 34.1
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 2.2e-10 69.7 129 34.9
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 2.2e-10 69.7 148 32.4
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 2.2e-10 69.7 133 39.1
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 4.9e-10 68.6 129 33.3
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 4.9e-10 68.6 146 35.6
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 8.3e-10 67.8 130 37.7
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 8.3e-10 67.8 132 35.6
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.1e-09 67.4 143 32.9
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.1e-09 67.4 130 34.6
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.4e-09 67.0 150 30.0
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 1.8e-09 66.6 129 30.2
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.2e-09 65.9 134 29.9
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 3.2e-09 65.9 147 34.7
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 4.1e-09 65.5 144 32.6
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 5.4e-09 65.1 149 30.9
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 7.0e-09 64.7 144 33.3
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 7.0e-09 64.7 143 32.9
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 7.0e-09 64.7 128 33.6
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 9.2e-09 64.3 138 34.1
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 1.2e-08 63.9 143 33.6
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.6e-08 63.5 137 33.6
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 2.0e-08 63.2 129 37.2
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 2.0e-08 63.2 131 38.2
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 3.5e-08 62.4 146 33.6
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 3.5e-08 62.4 130 31.5
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 4.6e-08 62.0 152 30.3
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 5.9e-08 61.6 137 32.8
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 5.9e-08 61.6 136 33.1
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 7.8e-08 61.2 143 34.3
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 1.0e-07 60.8 136 30.9
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.7e-07 60.1 141 33.3
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.7e-07 60.1 151 31.1
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 2.3e-07 59.7 131 30.5
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 2.3e-07 59.7 131 30.5
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 2.3e-07 59.7 127 33.9
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 3.9e-07 58.9 137 35.0
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 3.9e-07 58.9 129 34.1
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 3.9e-07 58.9 125 34.4
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 3.9e-07 58.9 147 31.3
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 3.9e-07 58.9 147 31.3
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 5.0e-07 58.5 136 31.6
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 6.6e-07 58.2 135 34.1
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 6.6e-07 58.2 129 34.1
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 1.1e-06 57.4 130 33.8
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.9e-06 56.6 138 29.7
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.9e-06 56.6 148 31.1
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.9e-06 56.6 129 34.1
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.3e-06 55.5 131 26.7
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.3e-06 55.5 131 26.7
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 5.6e-06 55.1 126 30.2
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 7.3e-06 54.7 151 29.1
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 9.5e-06 54.3 56 39.3


User provided reference genes

Program Settings