Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 6.0e-67 257.3 124 100.0
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 4.5e-46 188.0 101 91.1
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 5.9e-46 187.6 101 88.1
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 8.5e-45 183.7 97 88.7
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 4.2e-44 181.4 97 87.6
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 3.3e-41 171.8 98 80.6
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 4.3e-41 171.4 98 80.6
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 4.3e-41 171.4 101 79.2
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 9.7e-41 170.2 99 78.8
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.3e-40 169.9 99 77.8
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 2.2e-40 169.1 98 77.6
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 2.8e-40 168.7 106 75.5
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 4.8e-40 167.9 100 79.0
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 6.3e-40 167.5 100 78.0
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 6.3e-40 167.5 98 76.5
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 8.2e-40 167.2 99 77.8
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 8.2e-40 167.2 100 79.0
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.1e-39 166.8 100 78.0
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.4e-39 166.4 100 78.0
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 1.4e-39 166.4 100 77.0
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.8e-39 166.0 97 78.4
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.8e-39 166.0 100 77.0
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 5.3e-39 164.5 100 77.0
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 1.2e-38 163.3 99 74.7
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 1.5e-38 162.9 101 75.2
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 2.0e-38 162.5 97 76.3
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 2.0e-38 162.5 101 73.3
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 2.0e-38 162.5 101 73.3
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.6e-38 162.2 101 74.3
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 2.6e-38 162.2 101 76.2
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 2.6e-38 162.2 97 75.3
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 2.6e-38 162.2 101 73.3
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 2.6e-38 162.2 99 74.7
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 3.4e-38 161.8 101 74.3
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 4.5e-38 161.4 96 76.0
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 4.5e-38 161.4 100 77.0
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 5.9e-38 161.0 94 78.7
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 7.7e-38 160.6 101 75.2
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 1.3e-37 159.8 98 73.5
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 1.3e-37 159.8 96 75.0
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.7e-37 159.5 96 75.0
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.7e-37 159.5 98 75.5
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 2.2e-37 159.1 98 74.5
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 3.8e-37 158.3 100 74.0
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 3.8e-37 158.3 99 71.7
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 5.0e-37 157.9 99 72.7
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 5.0e-37 157.9 96 75.0
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 5.0e-37 157.9 101 72.3
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 5.0e-37 157.9 94 75.5
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 6.5e-37 157.5 100 72.0
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 8.5e-37 157.1 101 74.3
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 8.5e-37 157.1 101 72.3
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 1.4e-36 156.4 96 76.0
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 2.5e-36 155.6 122 63.9
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 2.5e-36 155.6 96 74.0
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 2.5e-36 155.6 101 73.3
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 3.2e-36 155.2 96 74.0
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 4.2e-36 154.8 101 71.3
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 4.2e-36 154.8 96 74.0
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 4.2e-36 154.8 101 71.3
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 5.5e-36 154.5 101 72.3
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 9.4e-36 153.7 99 70.7
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.2e-35 153.3 101 70.3
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.6e-35 152.9 96 74.0
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.6e-35 152.9 97 73.2
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 2.7e-35 152.1 99 68.7
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.6e-35 151.8 96 72.9
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 6.1e-35 151.0 95 72.6
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 7.9e-35 150.6 96 71.9
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 7.9e-35 150.6 101 68.3
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.8e-34 149.4 101 65.3
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 1.8e-34 149.4 101 67.3
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 2.3e-34 149.1 101 67.3
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 3.0e-34 148.7 99 68.7
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 3.0e-34 148.7 101 68.3
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 3.9e-34 148.3 101 67.3
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 3.9e-34 148.3 101 67.3
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 5.1e-34 147.9 96 69.8
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 6.7e-34 147.5 99 70.7
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 8.8e-34 147.1 99 65.7
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 8.8e-34 147.1 99 65.7
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 8.8e-34 147.1 101 65.3
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 1.5e-33 146.4 99 64.6
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 1.5e-33 146.4 96 67.7
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 1.5e-33 146.4 96 70.8
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 1.5e-33 146.4 99 64.6
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 2.6e-33 145.6 99 65.7
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 3.3e-33 145.2 99 64.6
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 4.4e-33 144.8 99 64.6
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 7.4e-33 144.1 93 71.0
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 9.7e-33 143.7 99 63.6
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 9.7e-33 143.7 99 63.6
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 9.7e-33 143.7 86 75.6
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.3e-32 143.3 101 64.4
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 2.2e-32 142.5 99 63.6
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.1e-31 140.2 96 67.7
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.8e-31 139.4 101 63.4
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 2.4e-31 139.0 99 62.6
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 5.3e-31 137.9 93 66.7
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 7.0e-31 137.5 116 56.0
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 1.2e-30 136.7 93 66.7
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 3.5e-30 135.2 125 54.4
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 7.7e-30 134.0 93 66.7
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.3e-29 133.3 134 53.7
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 2.2e-29 132.5 120 52.5
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 2.2e-29 132.5 96 61.5
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.9e-28 129.4 86 68.6
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 3.2e-28 128.6 102 55.9
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.5e-28 127.9 81 72.8
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 1.2e-27 126.7 96 59.4
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.7e-27 125.6 97 57.7
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 1.0e-26 123.6 93 61.3
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 1.0e-26 123.6 86 67.4
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.4e-26 123.2 69 81.2
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 3.0e-26 122.1 63 88.9
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 3.0e-26 122.1 88 68.2
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 5.7e-25 117.9 101 52.5
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 4.8e-24 114.8 69 76.8
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.0e-21 107.1 164 39.6
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 2.2e-21 105.9 94 46.8
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 8.5e-21 104.0 76 64.5
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 8.5e-21 104.0 72 65.3
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 7.2e-20 100.9 55 83.6
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 6.1e-19 97.8 102 48.0
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 4.0e-18 95.1 55 78.2
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 6.8e-18 94.4 60 68.3
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 6.8e-18 94.4 60 68.3
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 6.3e-16 87.8 59 67.8
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 8.3e-16 87.4 74 56.8
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 3.5e-14 82.0 57 64.9
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 2.9e-13 79.0 42 85.7
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.2e-11 73.6 46 69.6
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 1.4e-10 70.1 41 73.2
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 6.3e-08 61.2 71 43.7
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 2.0e-06 56.2 33 72.7
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 3.5e-06 55.5 38 60.5


User provided reference genes

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