Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 8.1e-91 337.0 168 100.0
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 9.7e-52 207.2 164 65.2
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 1.5e-39 166.8 198 50.0
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 1.9e-39 166.4 172 55.8
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 7.2e-39 164.5 195 49.2
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 4.7e-38 161.8 168 53.0
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 8.0e-38 161.0 191 50.3
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 1.4e-37 160.2 181 48.6
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 3.0e-37 159.1 191 49.7
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 4.0e-37 158.7 195 46.7
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 4.0e-37 158.7 193 50.8
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 6.7e-37 157.9 175 50.9
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 8.8e-37 157.5 188 48.4
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 1.5e-36 156.8 198 47.0
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 2.0e-36 156.4 197 45.2
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 2.0e-36 156.4 200 51.0
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 7.5e-36 154.5 191 47.6
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 7.5e-36 154.5 205 43.9
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 9.7e-36 154.1 167 52.1
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 9.7e-36 154.1 189 50.3
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 1.3e-35 153.7 175 50.3
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 1.3e-35 153.7 175 49.7
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 1.7e-35 153.3 194 46.9
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 2.8e-35 152.5 165 51.5
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 6.3e-35 151.4 193 44.6
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 8.2e-35 151.0 203 44.3
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 1.4e-34 150.2 195 45.6
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 2.4e-34 149.4 166 47.6
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 3.1e-34 149.1 220 43.2
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 4.1e-34 148.7 165 50.3
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 4.1e-34 148.7 200 46.5
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 5.3e-34 148.3 178 44.9
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 5.3e-34 148.3 170 49.4
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 5.3e-34 148.3 202 44.6
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 9.1e-34 147.5 198 43.9
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 1.6e-33 146.7 212 42.5
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 2.0e-33 146.4 195 44.6
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 2.0e-33 146.4 172 47.7
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 2.7e-33 146.0 198 45.5
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 2.7e-33 146.0 186 46.8
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 2.7e-33 146.0 179 48.0
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 5.9e-33 144.8 178 44.4
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 7.7e-33 144.4 171 48.5
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 1.0e-32 144.1 165 47.9
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 1.0e-32 144.1 165 49.1
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 1.7e-32 143.3 189 45.5
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 2.9e-32 142.5 165 47.9
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 2.9e-32 142.5 217 42.4
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 3.8e-32 142.1 187 44.4
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 3.8e-32 142.1 170 50.6
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 5.0e-32 141.7 197 47.2
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 5.0e-32 141.7 177 43.5
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 6.5e-32 141.4 165 49.1
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 6.5e-32 141.4 170 46.5
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 8.5e-32 141.0 188 44.1
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 8.5e-32 141.0 188 44.1
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 1.5e-31 140.2 165 47.3
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 1.5e-31 140.2 217 41.0
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 2.5e-31 139.4 165 46.7
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 2.5e-31 139.4 165 46.7
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 2.5e-31 139.4 189 45.5
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 4.2e-31 138.7 170 50.6
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 4.2e-31 138.7 191 44.0
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 5.5e-31 138.3 165 47.3
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 9.4e-31 137.5 125 58.4
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 1.2e-30 137.1 171 50.3
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 1.2e-30 137.1 186 46.2
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 1.2e-30 137.1 169 49.7
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 4.7e-30 135.2 164 45.7
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 4.7e-30 135.2 170 47.6
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 6.1e-30 134.8 196 42.3
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 1.0e-29 134.0 217 39.6
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 1.4e-29 133.7 172 48.3
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 1.5e-28 130.2 220 39.1
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 5.7e-28 128.3 198 39.4
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 7.5e-28 127.9 122 55.7
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 6.5e-24 114.8 174 42.0
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 8.5e-24 114.4 169 38.5
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 9.4e-23 110.9 138 44.2
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 6.1e-22 108.2 170 35.3
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 2.0e-17 93.2 203 32.0
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 3.6e-14 82.4 58 74.1
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 4.0e-13 79.0 135 37.8
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 3.4e-12 75.9 125 39.2
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 1.3e-11 73.9 238 28.2
Haze_08528 Corylus avellana HOM05D007146 ORTHO05D008971 3.7e-11 72.4 135 34.1
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 9.2e-10 67.8 147 31.3
MBI02_g40068_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 2.7e-09 66.2 147 30.6
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 2.3e-08 63.2 137 29.9
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 5.0e-08 62.0 135 30.4
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 1.1e-07 60.8 127 33.1


User provided reference genes

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