Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g186920 Amaranthus hybridus HOM05D002468 ORTHO05D009172 4.0e-100 368.2 204 100.0
AUR62041001 Chenopodium quinoa HOM05D002468 ORTHO05D009172 1.3e-55 220.3 159 68.6
Solyc11g033284.1 Solanum lycopersicum HOM05D002468 ORTHO05D009172 3.2e-49 199.1 148 68.9
Sopen11g017130 Solanum pennellii HOM05D002468 ORTHO05D009172 5.5e-49 198.4 148 68.9
Nitab4.5_0002569g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 3.5e-48 195.7 155 64.5
Sc11g0000070 Simmondsia chinensis HOM05D002468 ORTHO05D009172 3.5e-48 195.7 158 62.0
PGSC0003DMG401028027 Solanum tuberosum HOM05D002468 ORTHO05D009172 4.6e-48 195.3 149 67.1
Nn4g22124 Nelumbo nucifera HOM05D002468 ORTHO05D009172 6.0e-48 194.9 143 68.5
Nitab4.5_0004349g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 1.0e-47 194.1 164 61.0
Peaxi162Scf00842g00418 Petunia axillaris HOM05D002468 ORTHO05D009172 1.8e-47 193.4 130 71.5
ClCG07G011930 Citrullus lanatus HOM05D002468 ORTHO05D009172 2.3e-47 193.0 96 91.7
Ciclev10005642m.g Citrus clementina HOM05D002468 ORTHO05D009172 3.0e-47 192.6 172 58.7
Ca_07032_v3 Cicer arietinum L. HOM05D002468 ORTHO05D009172 5.1e-47 191.8 129 73.6
CAN.G624.2 Capsicum annuum HOM05D002468 ORTHO05D009172 6.7e-47 191.4 130 70.0
Lalb_Chr04g0257311 Lupinus albus HOM05D002468 ORTHO05D009172 6.7e-47 191.4 130 71.5
QL03p049029 Quercus lobata HOM05D002468 ORTHO05D009172 6.7e-47 191.4 153 64.7
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 8.7e-47 191.0 133 68.4
TWI36G1656 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 8.7e-47 191.0 130 72.3
Hma1.2p1_1436F.1_g283230 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 2.5e-46 189.5 138 66.7
Sed0016874 Sechium edule HOM05D002468 ORTHO05D009172 2.5e-46 189.5 96 90.6
TPR.G9727 Trifolium pratense HOM05D002468 ORTHO05D009172 2.5e-46 189.5 129 72.1
FAN07G2873 Fragaria x ananassa HOM05D002468 ORTHO05D009172 3.3e-46 189.1 142 64.8
Cc11_g14950 Coffea canephora HOM05D002468 ORTHO05D009172 4.3e-46 188.7 130 69.2
Dinv17538 Davidia involucrata HOM05D002468 ORTHO05D009172 4.3e-46 188.7 94 90.4
Migut.K01048 Erythranthe guttata HOM05D002468 ORTHO05D009172 4.3e-46 188.7 130 70.0
CANSAT80G1997 Cannabis sativa HOM05D002468 ORTHO05D009172 5.7e-46 188.3 131 68.7
Cfa009456 Carpinus fangiana HOM05D002468 ORTHO05D009172 5.7e-46 188.3 133 67.7
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.7e-46 188.3 142 64.8
Potri.001G068300 Populus trichocarpa HOM05D002468 ORTHO05D009172 7.4e-46 188.0 154 61.0
Atru.chr12.1429 Acer truncatum HOM05D002468 ORTHO05D009172 1.3e-45 187.2 145 64.1
vmacro01016 Vaccinium macrocarpon HOM05D002468 ORTHO05D009172 1.3e-45 187.2 94 89.4
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.6e-45 186.8 94 88.3
FvH4_4g22550 Fragaria vesca HOM05D002468 ORTHO05D009172 1.6e-45 186.8 130 70.0
Lj1g0015804 Lotus japonicus HOM05D002468 ORTHO05D009172 1.6e-45 186.8 129 71.3
CsaV3_4G002230 Cucumis sativus L. HOM05D002468 ORTHO05D009172 2.1e-45 186.4 143 65.7
Eucgr.G01979 Eucalyptus grandis HOM05D002468 ORTHO05D009172 2.1e-45 186.4 94 88.3
TAR622G1298 Trochodendron aralioides HOM05D002468 ORTHO05D009172 2.1e-45 186.4 129 69.0
Actinidia30582 Actinidia chinensis HOM05D002468 ORTHO05D009172 2.8e-45 186.0 163 60.7
MSTRG.8059 Avicennia marina HOM05D002468 ORTHO05D009172 2.8e-45 186.0 130 68.5
MELO3C017816.2 Cucumis melo HOM05D002468 ORTHO05D009172 2.8e-45 186.0 96 89.6
PGR119G1456 Punica granatum HOM05D002468 ORTHO05D009172 2.8e-45 186.0 95 88.4
Glyma.18G292600 Glycine max HOM05D002468 ORTHO05D009172 8.2e-45 184.5 94 89.4
Gohir.D04G141000 Gossypium hirsutum HOM05D002468 ORTHO05D009172 8.2e-45 184.5 94 90.4
Gorai.012G126000 Gossypium raimondii HOM05D002468 ORTHO05D009172 8.2e-45 184.5 94 90.4
Phvul.008G009400 Phaseolus vulgaris HOM05D002468 ORTHO05D009172 8.2e-45 184.5 129 70.5
CARHR200020 Cardamine hirsuta HOM05D002468 ORTHO05D009172 1.1e-44 184.1 130 69.2
RcHm_v2.0_Chr4g0428781 Rosa chinensis HOM05D002468 ORTHO05D009172 1.1e-44 184.1 144 61.1
Aqoxy5G03072 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 1.4e-44 183.7 145 62.8
Medtr7g006570 Medicago truncatula HOM05D002468 ORTHO05D009172 1.4e-44 183.7 129 69.8
Rhsim12G0017000 Rhododendron simsii HOM05D002468 ORTHO05D009172 1.4e-44 183.7 132 67.4
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.8e-44 183.3 133 69.2
Sabra01G0047500 Salix brachista HOM05D002468 ORTHO05D009172 1.8e-44 183.3 184 53.8
SGA_v2.0_scaffold258G45770 Striga asiatica HOM05D002468 ORTHO05D009172 1.8e-44 183.3 163 57.7
GSVIVG01001099001 Vitis vinifera HOM05D002468 ORTHO05D009172 1.8e-44 183.3 94 86.2
Zm00001eb040970 Zea mays HOM05D002468 ORTHO05D009172 1.8e-44 183.3 94 88.3
MD16G1141800 Malus domestica HOM05D002468 ORTHO05D009172 3.1e-44 182.6 129 68.2
Os07g0133700 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D009172 3.1e-44 182.6 94 87.2
AL6G24030 Arabidopsis lyrata HOM05D002468 ORTHO05D009172 4.1e-44 182.2 130 68.5
BcaNung01157 Brassica carinata HOM05D002468 ORTHO05D009172 5.3e-44 181.8 139 64.7
Manes.08G100500 Manihot esculenta HOM05D002468 ORTHO05D009172 5.3e-44 181.8 94 87.2
Psat3g206960 Pisum sativum HOM05D002468 ORTHO05D009172 6.9e-44 181.4 128 70.3
Thecc.02G191300 Theobroma cacao HOM05D002468 ORTHO05D009172 6.9e-44 181.4 94 88.3
TWI75G1838 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 6.9e-44 181.4 179 56.4
AT5G13410 Arabidopsis thaliana HOM05D002468 ORTHO05D009172 9.0e-44 181.0 130 67.7
Carub.0006s1157 Capsella rubella HOM05D002468 ORTHO05D009172 9.0e-44 181.0 130 67.7
Sp6g30610 Schrenkiella parvula HOM05D002468 ORTHO05D009172 9.0e-44 181.0 180 54.4
VMungo1383G2635 Vigna mungo HOM05D002468 ORTHO05D009172 9.0e-44 181.0 176 56.2
A02p01900 Brassica napus HOM05D002468 ORTHO05D009172 1.2e-43 180.6 139 64.0
BraA02t05163Z Brassica rapa HOM05D002468 ORTHO05D009172 1.2e-43 180.6 139 64.0
CDE06G1087 Ceratophyllum demersum HOM05D002468 ORTHO05D009172 1.5e-43 180.3 94 85.1
Prupe.1G214100 Prunus persica HOM05D002468 ORTHO05D009172 1.5e-43 180.3 129 67.4
EL10Ac7g17009 Beta vulgaris HOM05D002468 ORTHO05D009172 2.0e-43 179.9 89 91.0
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.0e-43 179.9 146 60.3
CiPaw.05G100600 Carya illinoinensis HOM05D002468 ORTHO05D009172 2.6e-43 179.5 94 85.1
MBI11_g34559_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D009172 2.6e-43 179.5 140 63.6
Aqoxy5G03073 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 4.5e-43 178.7 160 55.0
DCAR_026442 Daucus carota HOM05D002468 ORTHO05D009172 4.5e-43 178.7 94 86.2
Lsat_1_v5_gn_3_32621 Lactuca sativa HOM05D002468 ORTHO05D009172 5.9e-43 178.3 140 63.6
PSO017G2800 Papaver somniferum HOM05D002468 ORTHO05D009172 1.0e-42 177.6 94 85.1
ATR0582G095 Amborella trichopoda HOM05D002468 ORTHO05D009172 1.7e-42 176.8 94 85.1
BcaNung01882 Brassica carinata HOM05D002468 ORTHO05D009172 1.7e-42 176.8 130 66.2
THA.LOC104825606 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 2.2e-42 176.4 94 85.1
Glyma.02G090600 Glycine max HOM05D002468 ORTHO05D009172 2.9e-42 176.0 128 68.0
Thhalv10014743m.g Eutrema salsugineum HOM05D002468 ORTHO05D009172 3.8e-42 175.6 94 84.0
Aa31LG3G14280 Aethionema arabicum HOM05D002468 ORTHO05D009172 8.5e-42 174.5 137 63.5
HPP92_024421 Vanilla planifolia HOM05D002468 ORTHO05D009172 8.5e-42 174.5 93 86.0
Oeu010258.1 Olea europaea HOM05D002468 ORTHO05D009172 1.9e-41 173.3 88 88.6
Pp3c16_12110 Physcomitrium patens HOM05D002468 ORTHO05D009172 7.2e-41 171.4 94 80.9
SEGI_23050 Sequoiadendron giganteum HOM05D002468 ORTHO05D009172 7.2e-41 171.4 94 81.9
Lj6A840G36 Lonicera japonica HOM05D002468 ORTHO05D009172 3.6e-40 169.1 89 83.1
C02p06120 Brassica napus HOM05D002468 ORTHO05D009172 1.3e-39 167.2 141 60.3
BolC2t06553H Brassica oleracea HOM05D002468 ORTHO05D009172 5.1e-39 165.2 96 79.2
AagrBONN_evm.TU.Sc2ySwM_344.1577 Anthoceros agrestis HOM05D002468 ORTHO05D009172 8.7e-39 164.5 93 78.5
Pp3c5_13790 Physcomitrium patens HOM05D002468 ORTHO05D009172 3.3e-38 162.5 94 77.7
Mapoly0061s0100 Marchantia polymorpha HOM05D002468 ORTHO05D009172 7.4e-38 161.4 94 74.5
SMO137G0309 Selaginella moellendorffii HOM05D002468 ORTHO05D009172 3.7e-37 159.1 89 79.8
Cpa.g.sc38.65 Carica papaya HOM05D002468 ORTHO05D009172 1.0e-34 151.0 76 89.5
CBR_g38077 Chara braunii HOM05D002468 ORTHO05D009172 1.1e-33 147.5 92 68.5
arahy.Tifrunner.gnm1.ann1.PEQR69 Arachis hypogaea HOM05D002468 ORTHO05D009172 4.6e-32 142.1 139 56.8
arahy.Tifrunner.gnm1.ann1.QPD63Z Arachis hypogaea HOM05D002468 ORTHO05D009172 4.6e-32 142.1 139 56.8
Cre12.g534700 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 1.7e-29 133.7 132 49.2
PRCOL_00000716 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 3.2e-25 119.4 89 59.6
Gohir.A04G101800 Gossypium hirsutum HOM05D002468 ORTHO05D009172 8.8e-23 111.3 94 61.7
Hma1.2p1_1436F.1_g283220 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 8.8e-23 111.3 105 52.4
QL02p011811 Quercus lobata HOM05D002468 ORTHO05D009172 4.7e-16 89.0 47 83.0
THA.LOC104816706 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 4.7e-16 89.0 46 84.8
MD13G1131500 Malus domestica HOM05D002468 ORTHO05D009172 3.0e-15 86.3 47 80.9
MCO06G148 Micromonas commoda HOM05D002468 ORTHO05D009172 4.1e-12 75.9 79 46.8
PRCOL_00003949 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 3.6e-08 62.8 65 47.7
MCO11G048 Micromonas commoda HOM05D002468 ORTHO05D009172 8.8e-07 58.2 70 41.4


User provided reference genes

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