Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 1.0e-193 679.9 337 100.0
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 1.1e-144 516.9 337 76.3
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 4.4e-144 515.0 333 76.6
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 1.1e-131 473.8 348 68.1
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 6.3e-127 458.0 337 66.8
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 2.7e-125 452.6 330 65.2
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 1.3e-124 450.3 328 66.5
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 1.9e-123 446.4 331 66.2
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 2.5e-123 446.0 331 65.6
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 5.5e-123 444.9 331 64.0
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 2.7e-122 442.6 328 64.9
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 3.6e-122 442.2 329 65.0
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 1.0e-121 440.7 329 65.3
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 4.0e-121 438.7 328 63.4
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 3.4e-120 435.6 331 65.6
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 3.4e-120 435.6 328 62.5
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 4.4e-120 435.3 328 63.4
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.3e-119 433.7 328 62.8
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.2e-119 433.0 334 63.2
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.2e-119 433.0 330 63.9
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 2.8e-119 432.6 329 64.4
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 3.7e-119 432.2 329 63.8
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 6.3e-119 431.4 328 63.4
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 6.3e-119 431.4 328 64.3
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 6.3e-119 431.4 328 63.4
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 6.3e-119 431.4 329 64.4
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 8.3e-119 431.0 328 61.6
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 1.1e-118 430.6 328 63.4
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 1.4e-118 430.3 329 63.5
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.4e-118 430.3 329 63.5
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 1.4e-118 430.3 328 63.1
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 2.4e-118 429.5 328 61.6
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 3.1e-118 429.1 330 62.7
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 4.1e-118 428.7 328 64.0
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 4.1e-118 428.7 329 64.1
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 5.4e-118 428.3 328 62.8
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 7.0e-118 427.9 328 62.8
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 7.0e-118 427.9 330 62.1
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.2e-117 427.2 330 63.3
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 2.0e-117 426.4 337 62.3
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 4.5e-117 425.2 329 62.6
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 1.0e-116 424.1 328 61.6
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.3e-116 423.7 330 61.5
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 1.7e-116 423.3 332 63.3
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 2.9e-116 422.5 330 60.9
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 3.8e-116 422.2 330 60.9
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 6.6e-116 421.4 328 61.3
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 8.6e-116 421.0 337 62.0
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 8.6e-116 421.0 329 62.0
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 1.1e-115 420.6 330 61.5
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.1e-115 420.6 329 63.2
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.1e-115 420.6 329 63.2
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.1e-115 420.6 330 61.2
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 1.5e-115 420.2 332 61.1
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 1.5e-115 420.2 338 60.9
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 3.3e-115 419.1 328 61.6
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 4.2e-115 418.7 337 59.6
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 9.5e-115 417.5 337 62.3
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 2.1e-114 416.4 327 62.1
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 2.8e-114 416.0 330 60.0
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 4.7e-114 415.2 338 59.5
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 6.1e-114 414.8 328 61.3
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 8.0e-114 414.5 329 62.3
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 1.4e-113 413.7 328 61.0
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 1.4e-113 413.7 330 62.1
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 1.4e-113 413.7 321 60.4
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 1.8e-113 413.3 393 54.7
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 2.3e-113 412.9 327 61.2
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 2.3e-113 412.9 331 60.4
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.3e-113 412.9 338 60.4
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 4.0e-113 412.1 328 61.0
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 5.2e-113 411.8 332 59.9
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 6.8e-113 411.4 327 60.9
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 8.9e-113 411.0 339 60.8
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 1.2e-112 410.6 331 59.2
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 1.2e-112 410.6 331 59.2
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.5e-112 410.2 331 59.8
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.6e-112 409.5 328 61.0
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 5.7e-112 408.3 328 60.4
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 7.5e-112 407.9 328 60.4
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 7.5e-112 407.9 346 57.5
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 9.8e-112 407.5 336 59.8
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 1.7e-111 406.8 327 60.2
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 1.7e-111 406.8 328 59.8
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 4.9e-111 405.2 337 59.3
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.1e-110 404.1 264 75.8
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 2.4e-110 402.9 340 58.8
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 2.7e-109 399.4 299 63.9
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 1.0e-108 397.5 328 57.3
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 4.3e-107 392.1 295 62.4
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 6.2e-106 388.3 338 58.0
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 8.0e-106 387.9 385 53.5
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.3e-105 386.3 340 57.4
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 5.2e-105 385.2 338 58.6
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 1.1e-102 377.5 320 57.2
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 1.3e-100 370.5 324 56.2
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 7.3e-99 364.8 330 55.5
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 1.7e-95 353.6 268 63.1
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 2.2e-95 353.2 273 62.3
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 3.7e-95 352.4 328 54.9
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 6.4e-95 351.7 308 56.8
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 8.3e-95 351.3 290 60.3
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 2.1e-93 346.7 263 62.0
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 8.1e-90 334.7 329 54.1
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 3.1e-89 332.8 210 72.4
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 3.7e-87 325.9 327 52.3
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 5.2e-81 305.4 210 65.2
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 6.8e-81 305.1 324 48.8
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 4.3e-75 285.8 318 47.8
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 4.4e-72 275.8 317 46.1
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 5.6e-67 258.8 325 43.7
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 3.8e-63 246.1 314 41.7
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.7e-55 220.7 148 71.6
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 6.0e-53 212.2 146 71.2
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 1.3e-50 204.5 316 36.1
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 2.8e-50 203.4 345 39.1
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 6.3e-50 202.2 203 48.3
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 4.5e-40 169.5 174 49.4
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 2.0e-35 154.1 149 51.7
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 2.5e-35 153.7 186 47.8
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 2.8e-34 150.2 149 50.3
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 4.2e-30 136.3 96 65.6
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.2e-29 134.8 100 65.0
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 3.6e-29 133.3 97 64.9
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 5.3e-17 92.8 70 57.1
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.6e-16 91.3 67 64.2
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.3e-15 88.2 59 66.1
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.1e-13 80.9 63 60.3
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.6e-13 80.1 58 63.8


User provided reference genes

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