Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.2e-194 682.9 343 100.0
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 4.0e-121 438.7 341 66.3
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 4.8e-114 415.2 367 61.3
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 1.6e-101 373.6 313 63.9
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 3.9e-84 315.8 347 51.3
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 1.1e-70 271.2 361 45.7
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 2.1e-69 266.9 309 47.9
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.7e-69 266.5 348 44.0
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 2.3e-68 263.5 357 43.1
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 2.3e-68 263.5 351 44.2
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 5.2e-68 262.3 352 44.0
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 2.0e-67 260.4 363 41.3
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.6e-64 250.8 356 42.1
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.6e-64 250.8 362 44.5
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 3.5e-64 249.6 347 41.5
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 1.3e-63 247.7 353 42.5
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 2.3e-63 246.9 346 40.8
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 1.9e-62 243.8 345 42.6
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.9e-62 243.8 349 40.7
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 2.8e-61 240.0 350 40.9
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 4.7e-61 239.2 405 40.2
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 6.1e-61 238.8 350 40.9
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 6.1e-61 238.8 343 42.3
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 1.0e-60 238.0 349 40.1
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 2.3e-60 236.9 343 40.5
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 3.0e-60 236.5 354 41.5
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 4.0e-60 236.1 346 41.9
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 6.8e-60 235.3 347 39.8
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 6.8e-60 235.3 345 40.6
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 1.5e-59 234.2 355 42.0
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.5e-59 234.2 348 42.5
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 2.6e-59 233.4 352 42.6
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 3.4e-59 233.0 354 41.8
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 5.7e-59 232.3 342 40.9
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.3e-58 231.1 337 40.4
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 1.3e-58 231.1 350 40.9
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 1.7e-58 230.7 347 41.8
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 3.7e-58 229.6 344 40.7
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.7e-58 229.6 336 39.9
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 3.7e-58 229.6 347 38.6
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 4.9e-58 229.2 345 39.4
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 4.9e-58 229.2 355 38.9
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 4.9e-58 229.2 344 38.7
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 8.3e-58 228.4 345 39.4
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 7.0e-57 225.3 349 39.3
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 7.0e-57 225.3 337 39.5
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 2.7e-56 223.4 341 40.8
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 5.9e-56 222.2 354 39.3
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 2.3e-55 220.3 348 38.5
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 6.6e-55 218.8 352 38.6
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 8.6e-55 218.4 345 38.6
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 8.6e-55 218.4 357 37.8
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.5e-54 217.6 327 39.4
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 2.5e-54 216.9 327 39.1
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 9.5e-54 214.9 329 40.4
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 2.8e-53 213.4 325 41.2
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 6.1e-53 212.2 359 37.9
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 1.0e-52 211.5 358 36.6
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 1.0e-52 211.5 347 37.8
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 2.3e-52 210.3 351 37.6
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 3.1e-52 209.9 327 38.2
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 6.8e-52 208.8 364 38.7
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 1.5e-51 207.6 339 38.9
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.5e-51 207.6 334 36.8
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 1.5e-51 207.6 326 37.4
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 3.4e-51 206.5 333 36.9
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 4.4e-51 206.1 340 38.8
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 5.8e-51 205.7 362 36.5
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 5.8e-51 205.7 330 37.0
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 9.8e-51 204.9 329 35.9
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 9.8e-51 204.9 339 38.9
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 1.3e-50 204.5 331 36.9
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 2.9e-50 203.4 330 36.4
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 4.9e-50 202.6 334 35.9
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 6.4e-50 202.2 330 37.6
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 1.1e-49 201.4 331 37.2
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 1.1e-49 201.4 346 38.2
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 7.0e-49 198.7 347 36.0
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 1.6e-48 197.6 332 35.5
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 2.0e-48 197.2 367 37.1
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 3.0e-47 193.4 343 37.3
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 3.0e-47 193.4 342 38.9
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 3.9e-47 193.0 306 37.9
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 5.0e-47 192.6 350 34.6
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 1.1e-46 191.4 345 36.2
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 2.5e-46 190.3 336 37.5
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 1.6e-45 187.6 354 32.5
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 2.1e-45 187.2 331 35.6
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 2.1e-45 187.2 348 36.8
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 6.2e-45 185.7 306 35.6
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 1.8e-44 184.1 323 36.2
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 2.3e-44 183.7 345 34.5
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 3.1e-44 183.3 386 34.5
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 1.5e-43 181.0 353 34.0
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 2.0e-43 180.6 468 31.2
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 7.1e-41 172.2 195 48.7
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.6e-40 171.0 275 39.3
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 2.7e-40 170.2 331 36.6
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 2.7e-40 170.2 351 34.2
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 3.0e-39 166.8 332 35.2
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 1.1e-38 164.9 340 34.7
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 9.5e-38 161.8 303 36.3
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 1.2e-37 161.4 381 34.4
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 6.8e-36 155.6 198 42.4
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-35 154.8 275 34.2
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 3.4e-35 153.3 304 32.6
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 5.8e-35 152.5 342 34.5
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 7.6e-35 152.1 207 42.5
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.3e-34 151.4 192 43.2
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 1.9e-33 147.5 247 36.4
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 3.5e-32 143.3 241 37.8
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 3.5e-32 143.3 211 43.1
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 3.9e-31 139.8 295 33.2
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 8.6e-31 138.7 330 32.4
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 7.3e-30 135.6 204 40.2
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.7e-26 124.4 241 32.0
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 2.3e-23 114.0 120 53.3
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 2.0e-19 100.9 386 25.4
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 4.4e-19 99.8 405 23.7
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 4.4e-19 99.8 213 32.4
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 1.6e-16 91.3 90 50.0
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-15 88.2 159 34.6
Ah.13g066730 Amaranthus hybridus HOM05D014553 ORTHO05D018255 2.3e-15 87.4 44 97.7
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 3.3e-14 83.6 221 28.5
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 3.3e-14 83.6 221 28.5
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 3.3e-14 83.6 221 28.5
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 3.3e-14 83.6 221 28.5
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 5.6e-14 82.8 214 29.4
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 9.6e-14 82.0 92 48.9
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 9.6e-14 82.0 193 30.6
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 8.1e-13 79.0 119 40.3
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 9.0e-12 75.5 166 34.3
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 2.6e-11 73.9 161 29.8
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 3.4e-11 73.6 80 46.2
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 1.3e-10 71.6 373 23.9
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.8e-10 70.1 63 52.4
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 2.1e-08 64.3 63 49.2
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 7.9e-08 62.4 50 64.0


User provided reference genes

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