Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 6.4e-260 900.6 585 100.0
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 3.7e-98 363.2 567 52.4
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 7.7e-96 355.5 432 52.5
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 4.1e-81 306.6 564 47.2
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 4.4e-51 206.8 424 37.7
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 9.3e-25 119.4 451 31.3
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 3.5e-24 117.5 420 33.1
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 4.6e-24 117.1 451 32.2
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 6.0e-24 116.7 494 28.5
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 7.8e-24 116.3 451 32.2
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 1.3e-23 115.5 445 33.5
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 1.5e-22 112.1 490 30.8
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 1.9e-22 111.7 497 29.0
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 9.6e-22 109.4 414 33.1
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 8.1e-21 106.3 478 31.2
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 1.1e-20 105.9 458 29.7
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 1.4e-20 105.5 476 29.8
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 1.4e-20 105.5 457 31.1
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 4.0e-20 104.0 475 30.9
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 6.9e-20 103.2 390 31.0
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 9.0e-20 102.8 501 29.9
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 2.0e-19 101.7 535 28.0
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 2.6e-19 101.3 451 31.0
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 4.4e-19 100.5 449 30.3
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 5.8e-19 100.1 500 28.4
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 7.6e-19 99.8 522 27.2
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 9.9e-19 99.4 487 27.5
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 1.7e-18 98.6 473 29.6
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 6.4e-18 96.7 472 28.8
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 1.9e-17 95.1 425 29.4
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.9e-17 95.1 476 29.8
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 3.2e-17 94.4 504 27.8
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 5.4e-17 93.6 501 29.1
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 7.1e-17 93.2 460 30.4
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 9.3e-17 92.8 536 27.4
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 1.2e-16 92.4 400 31.0
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 1.6e-16 92.0 434 29.3
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 7.8e-16 89.7 554 26.9
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 1.3e-15 89.0 557 26.9
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 1.7e-15 88.6 457 28.2
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 2.3e-15 88.2 538 27.3
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 2.3e-15 88.2 443 27.3
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 5.1e-15 87.0 476 29.0
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 6.6e-15 86.7 452 27.0
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 6.6e-15 86.7 478 28.5
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 1.9e-14 85.1 520 27.7
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 4.3e-14 84.0 436 30.0
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 5.6e-14 83.6 431 27.6
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 7.3e-14 83.2 477 26.0
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 1.3e-13 82.4 467 28.9
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 2.1e-13 81.6 561 25.8
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 1.1e-12 79.3 420 27.9
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 1.4e-12 79.0 474 28.5
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 1.8e-12 78.6 464 27.4
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 1.8e-12 78.6 457 26.9
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 2.4e-12 78.2 444 28.4
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 5.3e-12 77.0 468 26.7
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 9.0e-12 76.3 588 26.0
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 1.5e-11 75.5 454 28.9
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 4.5e-11 73.9 472 27.3
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 1.7e-10 72.0 435 29.4
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 1.7e-10 72.0 58 67.2
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 2.9e-10 71.2 363 26.7
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 3.8e-10 70.9 60 60.0
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 4.9e-10 70.5 52 69.2
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 6.4e-10 70.1 427 27.4
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 8.4e-10 69.7 583 25.2
ECA236G4021 Erigeron canadensis HOM05D000553 ORTHO05D009211 1.4e-09 68.9 58 63.8
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 1.4e-09 68.9 484 28.1
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 1.9e-09 68.6 363 26.4
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 1.9e-09 68.6 155 36.8
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 1.9e-09 68.6 451 27.1
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 2.4e-09 68.2 57 66.7
ATR0150G007 Amborella trichopoda HOM05D007892 ORTHO05D009211 2.1e-08 65.1 66 56.1
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 2.1e-08 65.1 365 24.9
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 2.1e-08 65.1 61 60.7
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 2.7e-08 64.7 422 24.6
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 2.7e-08 64.7 435 26.0
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 4.6e-08 63.9 393 27.5
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 1.8e-07 62.0 133 37.6
Migut.M00782 Erythranthe guttata HOM05D007892 ORTHO05D009211 5.1e-07 60.5 445 26.1
BcaB05g22092 Brassica carinata HOM05D012500 ORTHO05D009211 1.1e-06 59.3 298 27.9
PSO675G5502 Papaver somniferum HOM05D056025 ORTHO05D009211 1.1e-06 59.3 115 40.0
PSO541G2379 Papaver somniferum HOM05D056025 ORTHO05D009211 1.9e-06 58.5 115 38.3
Nitab4.5_0002330g0130 Nicotiana tabacum HOM05D021138 ORTHO05D009211 2.5e-06 58.2 438 25.3
Os07g0107900 Oryza sativa ssp. japonica HOM05D061528 ORTHO05D009211 2.5e-06 58.2 58 58.6
Atru.chr2.2419 Acer truncatum HOM05D007892 ORTHO05D009211 4.3e-06 57.4 364 26.6
Nitab4.5_0005017g0030 Nicotiana tabacum HOM05D021138 ORTHO05D009211 4.3e-06 57.4 444 26.1
Sp6g16010 Schrenkiella parvula HOM05D012500 ORTHO05D009211 9.6e-06 56.2 454 25.1


User provided reference genes

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