Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 2.1e-76 288.9 142 100.0
Ah.04g164690 Amaranthus hybridus HOM05D034697 ORTHO05D008874 8.2e-28 127.5 141 58.2
Sc20g0001370 Simmondsia chinensis HOM05D007333 ORTHO05D008874 4.1e-19 98.6 115 44.3
EL10Ac4g08229 Beta vulgaris HOM05D034697 ORTHO05D008874 8.6e-17 90.9 120 50.0
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 1.9e-16 89.7 129 39.5
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 1.9e-16 89.7 134 39.6
AUR62019465 Chenopodium quinoa HOM05D000009 ORTHO05D008874 2.5e-16 89.4 89 53.9
AUR62036166 Chenopodium quinoa HOM05D034697 ORTHO05D008874 1.2e-15 87.0 85 55.3
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 1.2e-15 87.0 81 54.3
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 3.0e-14 82.4 130 40.8
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 5.2e-14 81.6 121 38.8
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 5.2e-14 81.6 126 38.9
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 6.8e-14 81.3 125 37.6
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 6.8e-14 81.3 82 46.3
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 6.8e-14 81.3 82 46.3
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 8.9e-14 80.9 80 52.5
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 8.9e-14 80.9 80 52.5
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 8.9e-14 80.9 80 52.5
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 8.9e-14 80.9 80 52.5
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 8.9e-14 80.9 82 46.3
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 1.2e-13 80.5 125 36.8
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 2.0e-13 79.7 123 39.0
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 2.6e-13 79.3 78 50.0
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 5.7e-13 78.2 82 43.9
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 5.7e-13 78.2 126 34.1
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 7.5e-13 77.8 131 40.5
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 9.8e-13 77.4 87 41.4
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 1.3e-12 77.0 79 46.8
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 1.3e-12 77.0 135 36.3
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 1.7e-12 76.6 76 52.6
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 2.2e-12 76.3 87 44.8
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 2.2e-12 76.3 112 38.4
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 2.8e-12 75.9 89 41.6
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 3.7e-12 75.5 137 35.0
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 3.7e-12 75.5 72 51.4
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 4.9e-12 75.1 100 39.0
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 6.3e-12 74.7 124 40.3
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 1.4e-11 73.6 106 39.6
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 1.8e-11 73.2 121 38.8
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 3.1e-11 72.4 121 34.7
Actinidia34782 Actinidia chinensis HOM05D007333 ORTHO05D008874 4.1e-11 72.0 76 43.4
Actinidia38900 Actinidia chinensis HOM05D007333 ORTHO05D008874 5.4e-11 71.6 76 44.7
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 5.4e-11 71.6 70 45.7
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 7.0e-11 71.2 106 34.9
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 9.2e-11 70.9 118 36.4
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 9.2e-11 70.9 85 45.9
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 1.6e-10 70.1 109 33.0
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 1.6e-10 70.1 94 39.4
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 1.6e-10 70.1 66 48.5
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 1.6e-10 70.1 131 32.8
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 2.0e-10 69.7 118 35.6
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 2.0e-10 69.7 74 44.6
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 2.7e-10 69.3 109 33.0
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 4.5e-10 68.6 92 41.3
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 4.5e-10 68.6 90 38.9
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 5.9e-10 68.2 126 33.3
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 5.9e-10 68.2 101 36.6
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 1.0e-09 67.4 118 35.6
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 1.0e-09 67.4 133 37.6
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 1.0e-09 67.4 74 45.9
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 1.0e-09 67.4 93 45.2
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 1.3e-09 67.0 115 38.3
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 1.3e-09 67.0 115 34.8
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 1.7e-09 66.6 120 35.0
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 1.7e-09 66.6 134 35.1
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 1.7e-09 66.6 81 44.4
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 2.3e-09 66.2 96 40.6
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 2.3e-09 66.2 66 50.0
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 2.3e-09 66.2 134 35.1
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 2.9e-09 65.9 82 41.5
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 3.8e-09 65.5 102 35.3
CSS0002382 Camellia sinensis var. sinensis HOM05D007333 ORTHO05D008874 3.8e-09 65.5 99 34.3
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 3.8e-09 65.5 114 31.6
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 5.0e-09 65.1 102 35.3
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 6.6e-09 64.7 107 37.4
SEGI_06473 Sequoiadendron giganteum HOM05D007333 ORTHO05D008874 6.6e-09 64.7 59 47.5
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 8.6e-09 64.3 138 32.6
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 1.5e-08 63.5 121 33.9
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 2.5e-08 62.8 88 39.8
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 2.5e-08 62.8 129 33.3
PSO339G5821 Papaver somniferum HOM05D007333 ORTHO05D008874 4.3e-08 62.0 84 35.7
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 4.3e-08 62.0 119 36.1
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 5.6e-08 61.6 134 34.3
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 9.5e-08 60.8 118 36.4
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 1.2e-07 60.5 105 36.2
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 1.2e-07 60.5 120 32.5
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 2.8e-07 59.3 50 52.0
Phvul.007G105600 Phaseolus vulgaris HOM05D007333 ORTHO05D008874 4.7e-07 58.5 87 41.4
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 8.0e-07 57.8 129 34.9
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 8.0e-07 57.8 59 49.2
Glyma.20G188900 Glycine max HOM05D007333 ORTHO05D008874 1.0e-06 57.4 79 41.8
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 1.4e-06 57.0 129 34.1
HPP92_009761 Vanilla planifolia HOM05D065211 ORTHO05D008874 1.4e-06 57.0 57 40.4
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 2.3e-06 56.2 84 39.3
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 2.3e-06 56.2 112 33.9
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 3.0e-06 55.8 141 32.6
Nn2g13958 Nelumbo nucifera HOM05D007333 ORTHO05D008874 6.8e-06 54.7 54 46.3


User provided reference genes

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