Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.4e-37 159.1 76 100.0
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 5.2e-29 130.6 76 81.6
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 6.4e-27 123.6 77 79.2
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 8.3e-27 123.2 72 77.8
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 8.3e-27 123.2 77 79.2
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 6.6e-24 113.6 64 81.2
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 5.6e-23 110.5 75 69.3
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 7.3e-23 110.2 64 76.6
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 7.3e-23 110.2 64 79.7
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.2e-22 109.4 62 82.3
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.1e-22 108.6 76 65.8
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.8e-22 108.2 64 75.0
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 3.6e-22 107.8 64 76.6
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 6.2e-22 107.1 64 78.1
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 6.2e-22 107.1 63 77.8
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 8.1e-22 106.7 64 76.6
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 8.1e-22 106.7 67 71.6
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 1.1e-21 106.3 63 76.2
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.1e-21 106.3 63 77.8
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.4e-21 105.9 73 67.1
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.4e-21 105.9 64 76.6
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.4e-21 105.9 77 64.9
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.8e-21 105.5 64 75.0
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 1.8e-21 105.5 64 73.4
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.8e-21 105.5 53 84.9
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 1.8e-21 105.5 61 78.7
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 2.3e-21 105.1 73 67.1
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 2.3e-21 105.1 62 75.8
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 2.3e-21 105.1 64 78.1
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 3.1e-21 104.8 64 73.4
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 3.1e-21 104.8 54 85.2
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 3.1e-21 104.8 75 68.0
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 4.0e-21 104.4 56 82.1
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 4.0e-21 104.4 80 65.0
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 5.2e-21 104.0 64 71.9
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 5.2e-21 104.0 64 70.3
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 5.2e-21 104.0 63 74.6
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.2e-21 104.0 63 74.6
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.2e-21 104.0 67 70.1
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.2e-21 104.0 67 70.1
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 5.2e-21 104.0 67 71.6
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 5.2e-21 104.0 63 74.6
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 5.2e-21 104.0 63 74.6
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 5.2e-21 104.0 67 73.1
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 5.2e-21 104.0 61 77.0
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 5.2e-21 104.0 62 74.2
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 6.8e-21 103.6 68 70.6
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 6.8e-21 103.6 62 72.6
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 6.8e-21 103.6 56 82.1
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 6.8e-21 103.6 56 80.4
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 6.8e-21 103.6 66 72.7
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 6.8e-21 103.6 66 72.7
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 8.9e-21 103.2 76 63.2
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 8.9e-21 103.2 64 73.4
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 8.9e-21 103.2 63 76.2
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 8.9e-21 103.2 63 76.2
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 8.9e-21 103.2 76 65.8
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 8.9e-21 103.2 53 84.9
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 8.9e-21 103.2 57 80.7
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 8.9e-21 103.2 50 88.0
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.2e-20 102.8 76 63.2
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.2e-20 102.8 62 74.2
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 1.2e-20 102.8 64 75.0
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.5e-20 102.4 79 64.6
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 1.5e-20 102.4 64 73.4
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.5e-20 102.4 63 74.6
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 1.5e-20 102.4 63 74.6
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 2.0e-20 102.1 56 80.4
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 2.0e-20 102.1 56 80.4
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 2.0e-20 102.1 63 74.6
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 2.0e-20 102.1 64 71.9
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.0e-20 102.1 62 74.2
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.6e-20 101.7 54 81.5
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 2.6e-20 101.7 68 67.6
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 2.6e-20 101.7 63 73.0
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 2.6e-20 101.7 63 71.4
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 2.6e-20 101.7 57 77.2
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 2.6e-20 101.7 48 91.7
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 3.4e-20 101.3 64 70.3
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 3.4e-20 101.3 63 74.6
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.4e-20 101.3 68 69.1
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 3.4e-20 101.3 62 72.6
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 3.4e-20 101.3 57 78.9
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 3.4e-20 101.3 57 78.9
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 4.4e-20 100.9 50 88.0
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 4.4e-20 100.9 64 70.3
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 4.4e-20 100.9 53 84.9
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 4.4e-20 100.9 53 84.9
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 4.4e-20 100.9 64 71.9
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 4.4e-20 100.9 64 71.9
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 4.4e-20 100.9 68 69.1
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 4.4e-20 100.9 56 80.4
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 4.4e-20 100.9 67 70.1
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 4.4e-20 100.9 53 84.9
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 4.4e-20 100.9 62 77.4
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 4.4e-20 100.9 50 86.0
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 4.4e-20 100.9 56 78.6
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 5.8e-20 100.5 61 75.4
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 5.8e-20 100.5 63 73.0
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 5.8e-20 100.5 53 79.2
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 5.8e-20 100.5 53 79.2
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 5.8e-20 100.5 59 74.6
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 7.5e-20 100.1 49 89.8
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 7.5e-20 100.1 62 72.6
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 9.9e-20 99.8 57 77.2
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 1.3e-19 99.4 64 70.3
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 1.7e-19 99.0 62 77.4
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 1.7e-19 99.0 50 84.0
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.7e-19 99.0 64 70.3
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.7e-19 99.0 67 64.2
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.2e-19 98.6 63 71.4
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 3.7e-19 97.8 57 73.7
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 3.7e-19 97.8 61 75.4
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 4.9e-19 97.4 66 72.7
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 4.9e-19 97.4 69 69.6
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 6.4e-19 97.1 64 67.2
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 6.4e-19 97.1 50 82.0
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 6.4e-19 97.1 53 81.1
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 6.4e-19 97.1 65 66.2
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 8.3e-19 96.7 48 81.2
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.1e-18 96.3 57 73.7
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 1.9e-18 95.5 56 71.4
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 1.9e-18 95.5 56 71.4
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.9e-18 95.5 50 82.0
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 2.4e-18 95.1 50 82.0
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 3.2e-18 94.7 57 71.9
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 3.2e-18 94.7 57 71.9
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 3.2e-18 94.7 57 71.9
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 3.2e-18 94.7 76 63.2
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 4.1e-18 94.4 50 84.0
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 4.1e-18 94.4 43 93.0
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 7.1e-18 93.6 63 76.2
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 9.2e-18 93.2 57 71.9
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 9.2e-18 93.2 57 71.9
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 9.2e-18 93.2 58 75.9
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 9.2e-18 93.2 58 75.9
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 1.2e-17 92.8 46 87.0
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 1.6e-17 92.4 57 71.9
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 2.1e-17 92.0 72 56.9
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 7.8e-17 90.1 60 63.3
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.3e-16 88.6 56 69.6
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.3e-16 88.6 56 69.6
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 3.0e-16 88.2 57 68.4
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 3.0e-16 88.2 57 68.4
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 5.1e-16 87.4 47 74.5
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 6.6e-16 87.0 68 60.3
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.3e-15 84.3 57 68.4
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 2.8e-14 81.6 42 78.6
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 2.8e-14 81.6 74 59.5
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 2.4e-13 78.6 43 76.7
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 4.9e-11 70.9 50 70.0
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 6.4e-11 70.5 52 69.2
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 3.0e-08 61.6 32 78.1
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 2.8e-06 55.1 42 66.7


User provided reference genes

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