Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 4.7e-166 587.8 298 100.0
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.3e-144 516.5 299 87.6
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.7e-144 516.2 299 87.3
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 3.3e-143 511.9 303 85.8
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 4.4e-108 395.2 308 67.2
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.7e-107 393.3 312 68.6
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 1.9e-106 389.8 307 67.4
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.9e-106 389.8 307 66.4
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 1.9e-106 389.8 307 65.8
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.2e-105 387.1 307 65.5
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 2.7e-105 386.0 307 66.8
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 1.7e-104 383.3 308 67.5
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 5.1e-104 381.7 306 67.3
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.5e-103 380.2 299 67.6
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 1.9e-103 379.8 304 66.1
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 2.5e-103 379.4 306 67.0
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.3e-103 379.0 307 65.8
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 7.4e-103 377.9 305 64.6
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.6e-102 376.7 301 66.8
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.1e-102 376.3 307 65.1
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.4e-101 373.6 302 65.9
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.8e-101 373.2 304 65.8
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.4e-101 372.9 304 66.8
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 3.1e-101 372.5 298 65.8
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 4.0e-101 372.1 307 64.5
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 5.3e-101 371.7 304 65.1
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 5.3e-101 371.7 307 65.8
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.5e-100 370.2 304 65.5
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.5e-100 370.2 304 65.5
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 2.0e-100 369.8 304 64.8
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.0e-100 369.8 301 65.4
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 2.6e-100 369.4 284 68.0
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 3.4e-100 369.0 304 64.8
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 4.5e-100 368.6 308 64.6
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.5e-100 368.6 304 64.1
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 4.5e-100 368.6 286 67.5
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 5.8e-100 368.2 304 64.8
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 7.6e-100 367.9 304 64.5
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 7.6e-100 367.9 304 65.1
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 7.6e-100 367.9 307 64.2
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 9.9e-100 367.5 308 63.3
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 9.9e-100 367.5 308 63.3
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 9.9e-100 367.5 308 64.6
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.3e-99 367.1 300 65.3
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.3e-99 367.1 303 64.7
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 1.7e-99 366.7 304 64.5
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.7e-99 366.7 304 64.8
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.7e-99 366.7 304 64.8
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 2.2e-99 366.3 304 64.5
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.2e-99 366.3 304 65.1
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 2.9e-99 365.9 304 64.1
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.9e-99 365.9 303 65.0
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.9e-99 365.9 306 64.7
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.8e-99 365.5 304 64.5
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 3.8e-99 365.5 307 64.2
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 3.8e-99 365.5 302 63.6
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 4.9e-99 365.2 304 64.1
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.9e-99 365.2 304 64.5
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 4.9e-99 365.2 306 64.7
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 4.9e-99 365.2 307 63.8
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 4.9e-99 365.2 301 65.1
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 6.4e-99 364.8 308 64.6
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 6.4e-99 364.8 304 64.8
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 8.4e-99 364.4 301 64.8
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 1.4e-98 363.6 312 64.7
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 1.9e-98 363.2 302 64.9
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.9e-98 363.2 306 64.4
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 2.4e-98 362.8 304 64.5
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 3.2e-98 362.5 300 64.3
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 4.2e-98 362.1 306 64.7
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 4.2e-98 362.1 306 64.1
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 5.5e-98 361.7 304 64.1
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 5.5e-98 361.7 308 62.7
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 7.1e-98 361.3 312 62.5
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 9.3e-98 360.9 304 63.8
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 1.2e-97 360.5 302 64.2
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.2e-97 360.5 303 64.0
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 1.2e-97 360.5 302 64.9
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.6e-97 360.1 303 63.7
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.6e-97 360.1 314 63.1
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 1.6e-97 360.1 303 63.7
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 2.1e-97 359.8 315 63.5
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 2.1e-97 359.8 304 64.1
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.7e-97 359.4 301 64.1
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 3.5e-97 359.0 303 63.0
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 3.5e-97 359.0 304 63.2
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 4.6e-97 358.6 303 63.4
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 4.6e-97 358.6 305 62.6
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 4.6e-97 358.6 304 62.5
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 4.6e-97 358.6 304 62.5
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 4.6e-97 358.6 304 62.5
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 4.6e-97 358.6 308 63.3
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 6.0e-97 358.2 305 63.3
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.0e-96 357.5 305 63.0
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 3.0e-96 355.9 303 62.7
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 3.0e-96 355.9 298 64.1
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 3.0e-96 355.9 301 63.1
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 5.1e-96 355.1 277 67.1
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 5.1e-96 355.1 305 63.3
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-95 354.0 299 62.9
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.1e-95 354.0 278 66.9
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 2.5e-95 352.8 278 66.9
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 5.6e-95 351.7 300 61.7
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 5.6e-95 351.7 305 64.3
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 7.4e-95 351.3 300 62.3
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 1.6e-94 350.1 292 63.7
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.1e-94 349.7 304 62.2
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 2.1e-94 349.7 313 63.6
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 2.8e-94 349.4 305 62.6
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 3.7e-94 349.0 305 63.0
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 3.7e-94 349.0 314 61.5
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.2e-94 348.2 301 63.8
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 6.2e-94 348.2 303 62.7
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 6.2e-94 348.2 301 62.1
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 6.2e-94 348.2 304 63.2
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 2.4e-93 346.3 297 63.6
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 4.0e-93 345.5 298 63.1
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 5.3e-93 345.1 298 63.1
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.5e-92 343.6 299 61.9
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.5e-92 343.6 305 62.6
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 1.5e-92 343.6 305 62.6
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 5.8e-92 341.7 305 61.0
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 7.6e-92 341.3 304 60.2
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 1.3e-91 340.5 313 60.7
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.7e-91 340.1 299 61.2
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 2.2e-91 339.7 302 62.9
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.8e-91 339.0 291 63.9
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 1.4e-90 337.0 305 60.3
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 1.4e-90 337.0 305 60.3
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 1.9e-90 336.7 305 60.7
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 7.1e-90 334.7 306 61.1
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 9.3e-90 334.3 302 60.9
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 1.2e-89 334.0 306 59.8
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 5.1e-88 328.6 313 56.9
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 8.7e-88 327.8 303 59.4
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.6e-86 323.6 307 57.3
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 1.4e-85 320.5 302 58.6
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 1.8e-85 320.1 307 58.0
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.2e-84 317.4 302 58.9
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 2.6e-84 316.2 297 56.6
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 3.0e-80 302.8 302 55.6
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.2e-78 296.6 246 63.4
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 5.0e-75 285.4 296 56.1
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 1.9e-74 283.5 257 58.4
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 1.6e-73 280.4 262 56.1
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 5.0e-67 258.8 193 69.4
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.7e-65 253.1 211 64.0
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 2.6e-63 246.5 269 50.2
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 7.0e-61 238.4 284 48.6
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 3.3e-55 219.5 274 46.0
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.4e-53 214.2 283 45.6
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 6.1e-49 198.7 169 62.1
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 7.5e-47 191.8 281 43.8
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 5.4e-45 185.7 153 64.7
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 9.8e-39 164.9 150 58.7
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 2.8e-38 163.3 139 61.9
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 2.4e-37 160.2 147 59.2
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 1.8e-24 117.5 112 60.7
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 5.8e-23 112.5 112 58.9
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 9.2e-21 105.1 82 67.1
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 4.6e-20 102.8 99 61.6
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 7.8e-20 102.1 104 51.0
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.6e-17 94.4 334 26.3
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 1.6e-12 77.8 56 62.5
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.1e-08 65.1 89 49.4
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 6.8e-08 62.4 72 51.4
QL03p058965 Quercus lobata HOM05D005748 ORTHO05D007123 1.5e-07 61.2 152 30.9
PGSC0003DMG400020380 Solanum tuberosum HOM05D005748 ORTHO05D007123 9.9e-07 58.5 143 32.9
EL10Ac6g13715 Beta vulgaris HOM05D005748 ORTHO05D007123 1.3e-06 58.2 151 29.1
Potri.008G188600 Populus trichocarpa HOM05D005748 ORTHO05D007123 2.2e-06 57.4 158 32.9
Sp1g20810 Schrenkiella parvula HOM05D005748 ORTHO05D007123 2.9e-06 57.0 152 32.9
A08p28200 Brassica napus HOM05D005748 ORTHO05D007123 3.8e-06 56.6 150 31.3
BraA08t34751Z Brassica rapa HOM05D005748 ORTHO05D007123 3.8e-06 56.6 150 31.3
BcaC07g39197 Brassica carinata HOM05D005748 ORTHO05D007123 6.4e-06 55.8 152 32.2
BolC8t49826H Brassica oleracea HOM05D005748 ORTHO05D007123 6.4e-06 55.8 117 36.8
Carub.0001s2295 Capsella rubella HOM05D005748 ORTHO05D007123 6.4e-06 55.8 152 30.3
AUR62005423 Chenopodium quinoa HOM05D005748 ORTHO05D007123 6.4e-06 55.8 147 31.3
AUR62014085 Chenopodium quinoa HOM05D005748 ORTHO05D007123 6.4e-06 55.8 147 31.3
Peaxi162Scf00057g02525 Petunia axillaris HOM05D005748 ORTHO05D007123 6.4e-06 55.8 143 30.8
Hund06012 Selenicereus undatus HOM05D005748 ORTHO05D007123 6.4e-06 55.8 143 29.4
Solyc12g019010.2 Solanum lycopersicum HOM05D005748 ORTHO05D007123 8.4e-06 55.5 143 30.8


User provided reference genes

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