Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 1.6e-227 792.3 391 100.0
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 2.6e-164 582.4 385 73.2
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 8.6e-144 514.2 385 64.4
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 4.3e-143 511.9 352 71.3
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 8.1e-126 454.5 390 56.9
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 4.0e-125 452.2 392 56.6
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 5.4e-122 441.8 391 55.8
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 2.1e-121 439.9 390 55.9
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 6.6e-120 434.9 389 56.3
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 1.5e-119 433.7 390 55.4
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 3.3e-119 432.6 390 55.4
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 5.6e-119 431.8 395 55.9
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 7.4e-119 431.4 389 53.5
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 9.6e-119 431.0 394 54.3
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 2.8e-118 429.5 385 55.1
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 6.2e-118 428.3 387 55.6
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 6.2e-118 428.3 390 55.9
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 1.4e-117 427.2 385 55.1
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 1.8e-117 426.8 385 55.6
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 3.1e-117 426.0 388 55.7
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 2.6e-116 422.9 388 52.3
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 3.4e-116 422.5 389 54.5
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 7.6e-116 421.4 390 51.8
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 1.7e-115 420.2 385 54.3
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 2.9e-115 419.5 391 54.7
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 5.5e-114 415.2 385 52.7
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 1.2e-113 414.1 393 51.9
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 2.1e-113 413.3 394 52.5
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 2.7e-113 412.9 388 52.3
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 6.7e-112 408.3 383 52.0
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 1.5e-111 407.1 388 51.5
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 2.5e-111 406.4 393 52.4
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 7.4e-111 404.8 362 55.0
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 9.6e-111 404.4 392 51.0
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 9.6e-111 404.4 286 69.9
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 1.6e-110 403.7 389 52.7
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 2.8e-110 402.9 388 51.0
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 1.8e-109 400.2 394 51.5
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 3.1e-109 399.4 385 51.4
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 3.1e-109 399.4 383 51.4
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 4.0e-109 399.1 385 51.4
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 4.0e-109 399.1 387 51.2
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 5.3e-109 398.7 388 50.5
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 6.9e-109 398.3 389 52.4
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 9.0e-109 397.9 391 52.9
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 9.0e-109 397.9 385 52.7
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 1.5e-108 397.1 389 51.2
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 2.6e-108 396.4 390 50.3
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 2.6e-108 396.4 385 51.2
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 3.4e-108 396.0 389 50.1
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 4.5e-108 395.6 387 51.7
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 7.6e-108 394.8 388 50.5
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 7.6e-108 394.8 385 49.9
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 1.3e-107 394.0 388 51.3
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 1.3e-107 394.0 385 51.2
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 2.9e-107 392.9 394 50.5
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 1.4e-106 390.6 388 49.0
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 7.1e-106 388.3 389 50.9
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 9.3e-106 387.9 385 50.1
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 1.6e-105 387.1 409 47.9
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 3.5e-105 386.0 383 50.9
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 4.6e-105 385.6 389 50.1
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 1.3e-104 384.0 395 49.4
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 1.3e-104 384.0 392 49.5
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 1.8e-104 383.6 388 50.0
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 3.0e-104 382.9 344 55.8
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 5.1e-104 382.1 392 49.5
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 3.3e-103 379.4 327 56.6
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 1.6e-102 377.1 384 48.7
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 6.9e-101 371.7 329 53.5
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 2.0e-100 370.2 385 49.4
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 3.8e-99 365.9 393 46.8
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 2.5e-98 363.2 320 55.9
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 1.6e-97 360.5 385 46.8
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 1.0e-96 357.8 390 48.7
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 1.8e-96 357.1 315 54.6
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 1.9e-95 353.6 389 47.3
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 9.7e-95 351.3 345 51.3
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 4.8e-94 349.0 350 51.4
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 6.3e-94 348.6 344 50.6
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 1.2e-92 344.4 416 44.0
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 3.4e-92 342.8 317 53.9
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 3.7e-86 322.8 386 44.3
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 9.1e-85 318.2 266 57.5
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 5.9e-84 315.5 297 53.5
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 1.1e-82 311.2 307 50.2
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 5.1e-80 302.4 385 41.0
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 2.6e-79 300.1 309 50.8
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 1.1e-77 294.7 390 41.3
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 2.5e-74 283.5 291 50.2
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 3.0e-72 276.6 241 56.0
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 4.0e-72 276.2 281 48.8
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 9.7e-71 271.6 387 39.5
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 1.3e-70 271.2 268 49.3
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 1.5e-58 231.1 254 50.8
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 1.8e-56 224.2 230 52.6
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.1e-49 199.1 280 41.4
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 8.0e-49 198.7 194 49.0
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 1.5e-42 177.9 202 45.0
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 3.3e-42 176.8 397 30.5
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 7.3e-42 175.6 227 42.3
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 1.4e-40 171.4 349 32.4
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 1.9e-34 151.0 277 33.6
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 8.1e-33 145.6 236 38.6
FAN16G0901 Fragaria x ananassa HOM05D007013 ORTHO05D008999 9.2e-21 105.5 99 51.5
RcHm_v2.0_Chr4g0424981 Rosa chinensis HOM05D007013 ORTHO05D008999 6.9e-16 89.4 92 43.5
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 3.4e-15 87.0 131 35.1
SEGI_13858 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 3.6e-09 67.0 89 38.2
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 8.1e-09 65.9 101 37.6
Zm00001eb030810 Zea mays HOM05D007013 ORTHO05D008999 6.9e-08 62.8 91 37.4
MELO3C022571.2 Cucumis melo HOM05D016993 ORTHO05D019020 2.2e-06 57.8 58 50.0
MELO3C029988.2 Cucumis melo HOM05D007013 ORTHO05D029173 6.4e-06 56.2 58 50.0


User provided reference genes

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