Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 1.9e-50 202.2 104 100.0
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 6.5e-30 134.0 109 67.9
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 2.5e-13 79.0 93 52.7
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 5.1e-11 71.2 69 58.0
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 8.8e-11 70.5 67 61.2
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 8.8e-11 70.5 58 62.1
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 8.8e-11 70.5 99 45.5
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 2.0e-10 69.3 57 64.9
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 2.0e-10 69.3 57 63.2
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 2.5e-10 68.9 95 46.3
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 3.3e-10 68.6 57 61.4
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.3e-10 68.2 64 56.2
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.3e-10 68.2 64 56.2
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 5.7e-10 67.8 112 44.6
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 5.7e-10 67.8 59 64.4
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 5.7e-10 67.8 87 50.6
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 9.7e-10 67.0 100 48.0
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 1.3e-09 66.6 57 63.2
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 1.3e-09 66.6 64 59.4
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.7e-09 66.2 60 60.0
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.7e-09 66.2 47 68.1
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.7e-09 66.2 85 44.7
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 1.7e-09 66.2 67 56.7
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 2.2e-09 65.9 86 47.7
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.8e-09 65.5 87 50.6
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 2.8e-09 65.5 54 64.8
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 2.8e-09 65.5 53 66.0
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.7e-09 65.1 54 61.1
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 4.8e-09 64.7 62 58.1
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 4.8e-09 64.7 60 60.0
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 6.3e-09 64.3 60 58.3
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 6.3e-09 64.3 64 53.1
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 6.3e-09 64.3 57 61.4
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 6.3e-09 64.3 88 44.3
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 8.2e-09 63.9 99 41.4
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 1.1e-08 63.5 97 40.2
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.1e-08 63.5 90 42.2
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 1.1e-08 63.5 62 59.7
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 1.4e-08 63.2 86 47.7
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.4e-08 63.2 104 46.2
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 1.4e-08 63.2 55 63.6
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 1.8e-08 62.8 97 45.4
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.8e-08 62.8 56 58.9
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 2.4e-08 62.4 54 63.0
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 4.1e-08 61.6 59 59.3
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 4.1e-08 61.6 48 64.6
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 6.9e-08 60.8 78 44.9
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 9.1e-08 60.5 105 40.0
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 9.1e-08 60.5 82 48.8
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 1.2e-07 60.1 107 39.3
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 1.2e-07 60.1 107 39.3
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 1.2e-07 60.1 107 39.3
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 1.2e-07 60.1 107 39.3
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.2e-07 60.1 59 61.0
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 1.5e-07 59.7 93 40.9
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 1.5e-07 59.7 63 55.6
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.5e-07 59.7 84 48.8
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 1.5e-07 59.7 106 44.3
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 2.0e-07 59.3 110 42.7
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.0e-07 59.3 59 61.0
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 2.0e-07 59.3 59 61.0
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 2.0e-07 59.3 92 45.7
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 2.6e-07 58.9 107 38.3
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 3.4e-07 58.5 55 60.0
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 3.4e-07 58.5 84 45.2
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 3.4e-07 58.5 56 58.9
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 4.5e-07 58.2 57 59.6
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 4.5e-07 58.2 51 62.7
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 4.5e-07 58.2 92 43.5
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 4.5e-07 58.2 63 46.0
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 5.9e-07 57.8 86 44.2
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 5.9e-07 57.8 51 58.8
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 5.9e-07 57.8 93 46.2
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 7.7e-07 57.4 73 49.3
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 7.7e-07 57.4 51 58.8
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 1.0e-06 57.0 73 49.3
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 1.3e-06 56.6 53 52.8
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 1.3e-06 56.6 107 42.1
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 1.7e-06 56.2 84 40.5
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.7e-06 56.2 49 63.3
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 1.7e-06 56.2 49 63.3
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 2.2e-06 55.8 111 44.1
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 2.9e-06 55.5 52 55.8
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 3.8e-06 55.1 49 59.2
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 3.8e-06 55.1 49 59.2
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 5.0e-06 54.7 89 43.8
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 5.0e-06 54.7 87 48.3
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 8.5e-06 53.9 54 59.3
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 8.5e-06 53.9 97 39.2


User provided reference genes

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