Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g181330 Amaranthus hybridus HOM05D005871 ORTHO05D003654 7.6e-97 357.5 221 100.0
Ah.04g166520 Amaranthus hybridus HOM05D005871 ORTHO05D003654 4.2e-47 192.2 220 67.3
AUR62017078 Chenopodium quinoa HOM05D005871 ORTHO05D003654 1.1e-21 107.8 174 57.5
Sc16g0008000 Simmondsia chinensis HOM05D005871 ORTHO05D003654 7.6e-12 75.1 237 43.5
Sp3g11300 Schrenkiella parvula HOM05D010616 ORTHO05D003654 4.9e-11 72.4 219 32.4
Thhalv10021559m.g Eutrema salsugineum HOM05D010616 ORTHO05D003654 8.4e-11 71.6 184 31.5
VMungo0647G1579 Vigna mungo HOM05D005871 ORTHO05D003654 9.2e-10 68.2 240 30.0
BcaNung05271 Brassica carinata HOM05D010616 ORTHO05D003654 1.6e-09 67.4 228 38.2
A05p36410 Brassica napus HOM05D010616 ORTHO05D003654 1.6e-09 67.4 193 31.1
BraA05t22441Z Brassica rapa HOM05D010616 ORTHO05D003654 1.6e-09 67.4 192 30.2
Phvul.006G056300 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 1.6e-09 67.4 224 29.0
TWI38G0819 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 1.6e-09 67.4 226 29.2
Cfa020208 Carpinus fangiana HOM05D005871 ORTHO05D003654 2.1e-09 67.0 206 36.9
Lj6g0021132 Lotus japonicus HOM05D005871 ORTHO05D003654 2.7e-09 66.6 229 29.3
MD03G1184900 Malus domestica HOM05D005871 ORTHO05D003654 3.5e-09 66.2 230 37.0
CiPaw.12G137100 Carya illinoinensis HOM05D005871 ORTHO05D003654 4.6e-09 65.9 209 39.2
Haze_09808 Corylus avellana HOM05D005871 ORTHO05D003654 6.0e-09 65.5 206 33.0
Glyma.18G078200 Glycine max HOM05D005871 ORTHO05D003654 6.0e-09 65.5 237 30.8
Hma1.2p1_0657F.1_g196840 Hydrangea macrophylla HOM05D005871 ORTHO05D003654 7.8e-09 65.1 235 35.7
Gohir.D05G383000 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.0e-08 64.7 206 38.8
Glyma.08G328600 Glycine max HOM05D005871 ORTHO05D003654 1.3e-08 64.3 243 30.0
Prupe.4G241600 Prunus persica HOM05D005871 ORTHO05D003654 2.3e-08 63.5 226 37.2
BcaC05g29208 Brassica carinata HOM05D010616 ORTHO05D003654 3.0e-08 63.2 193 32.1
C05p54810 Brassica napus HOM05D010616 ORTHO05D003654 3.0e-08 63.2 193 32.1
BolC5t34153H Brassica oleracea HOM05D010616 ORTHO05D003654 3.0e-08 63.2 193 32.1
Carub.0003s1247 Capsella rubella HOM05D010616 ORTHO05D003654 3.0e-08 63.2 191 38.2
CARHR087720 Cardamine hirsuta HOM05D010616 ORTHO05D003654 3.0e-08 63.2 186 37.6
TWI38G1492 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 3.0e-08 63.2 217 31.3
Gohir.D05G383100 Gossypium hirsutum HOM05D005871 ORTHO05D003654 3.9e-08 62.8 211 41.7
Gorai.009G449400 Gossypium raimondii HOM05D005871 ORTHO05D003654 3.9e-08 62.8 204 38.7
Gorai.009G449600 Gossypium raimondii HOM05D005871 ORTHO05D003654 3.9e-08 62.8 211 40.8
Thecc.07G015800 Theobroma cacao HOM05D005871 ORTHO05D003654 3.9e-08 62.8 240 28.3
CiPaw.09G107300 Carya illinoinensis HOM05D005871 ORTHO05D003654 5.1e-08 62.4 228 30.7
Gohir.D05G382900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 5.1e-08 62.4 204 42.2
Gohir.A04G006400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 6.6e-08 62.0 206 35.9
Gohir.D08G035400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 6.6e-08 62.0 216 28.2
Gorai.004G033400 Gossypium raimondii HOM05D005871 ORTHO05D003654 6.6e-08 62.0 211 28.9
Medtr2g026565 Medicago truncatula HOM05D005871 ORTHO05D003654 1.1e-07 61.2 226 30.1
EL10Ac4g07598 Beta vulgaris HOM05D001421 ORTHO05D001245 1.5e-07 60.8 124 58.1
TPR.G10004 Trifolium pratense HOM05D005871 ORTHO05D003654 1.5e-07 60.8 225 29.8
AT3G13130 Arabidopsis thaliana HOM05D010616 ORTHO05D003654 1.9e-07 60.5 199 28.6
TAR626G0615 Trochodendron aralioides HOM05D005871 ORTHO05D003654 1.9e-07 60.5 210 31.4
BcaB06g25485 Brassica carinata HOM05D010616 ORTHO05D003654 2.5e-07 60.1 181 30.4
Glyma.02G299500 Glycine max HOM05D005871 ORTHO05D003654 2.5e-07 60.1 231 38.5
Thecc.06G238200 Theobroma cacao HOM05D005871 ORTHO05D003654 2.5e-07 60.1 216 40.3
Glyma.09G012800 Glycine max HOM05D005871 ORTHO05D003654 3.3e-07 59.7 226 40.7
QL08p004709 Quercus lobata HOM05D005871 ORTHO05D003654 3.3e-07 59.7 226 40.3
Gohir.A08G024900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 4.3e-07 59.3 209 28.2
Manes.15G061300 Manihot esculenta HOM05D005871 ORTHO05D003654 4.3e-07 59.3 222 28.8
Lalb_Chr18g0057151 Lupinus albus HOM05D005871 ORTHO05D003654 5.6e-07 58.9 229 31.0
Gohir.D06G162300 Gossypium hirsutum HOM05D005871 ORTHO05D003654 7.3e-07 58.5 198 27.8
Gorai.010G189400 Gossypium raimondii HOM05D005871 ORTHO05D003654 7.3e-07 58.5 198 27.8
THA.LOC104810289 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 7.3e-07 58.5 186 33.9
Glyma.14G014200 Glycine max HOM05D005871 ORTHO05D003654 9.6e-07 58.2 236 31.4
Ah.09g234010 Amaranthus hybridus HOM05D005871 ORTHO05D003654 1.2e-06 57.8 205 27.3
Manes.03G140300 Manihot esculenta HOM05D005871 ORTHO05D003654 1.2e-06 57.8 270 31.5
Potri.014G166900 Populus trichocarpa HOM05D008806 ORTHO05D003654 1.6e-06 57.4 203 38.9
Sabra16G0239800 Salix brachista HOM05D005871 ORTHO05D003654 1.6e-06 57.4 237 29.1
TWI39G0465 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 2.1e-06 57.0 228 29.8
VMungo0540G2170 Vigna mungo HOM05D005871 ORTHO05D003654 2.1e-06 57.0 231 37.2
Medtr5g095630 Medicago truncatula HOM05D005871 ORTHO05D003654 2.8e-06 56.6 224 36.2
VMungo0540G0718 Vigna mungo HOM05D005871 ORTHO05D003654 2.8e-06 56.6 229 30.6
Cpa.g.sc12.163 Carica papaya HOM05D005871 ORTHO05D003654 3.6e-06 56.2 241 36.9
COL.COLO4_09813 Corchorus olitorius HOM05D005871 ORTHO05D003654 3.6e-06 56.2 240 28.3
Phvul.008G278200 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 3.6e-06 56.2 217 32.3
CANSAT11G0434 Cannabis sativa HOM05D005871 ORTHO05D003654 4.7e-06 55.8 34 82.4
Psat1g173400 Pisum sativum HOM05D005871 ORTHO05D003654 4.7e-06 55.8 184 34.2
Lalb_Chr04g0247911 Lupinus albus HOM05D005871 ORTHO05D003654 6.2e-06 55.5 227 27.8


User provided reference genes

Program Settings