Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 5.0e-64 247.7 131 100.0
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 5.4e-50 201.1 131 80.2
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 2.5e-47 192.2 131 77.9
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.3e-47 191.4 131 77.1
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.2e-46 189.9 131 76.3
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.1e-45 186.8 131 74.8
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 4.4e-44 181.4 131 71.0
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 4.4e-44 181.4 131 71.0
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.9e-43 178.7 130 72.3
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.9e-43 177.9 130 70.0
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.4e-42 175.6 131 67.2
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.2e-42 175.3 131 69.5
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 4.2e-42 174.9 131 71.0
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 5.4e-42 174.5 132 68.9
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 5.4e-42 174.5 131 68.7
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.1e-42 174.1 131 68.7
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 7.1e-42 174.1 130 67.7
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 9.3e-42 173.7 131 70.2
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 1.2e-41 173.3 131 69.5
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 2.7e-41 172.2 131 70.2
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.7e-41 172.2 131 71.0
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 3.5e-41 171.8 131 67.9
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 3.5e-41 171.8 131 69.5
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 4.6e-41 171.4 131 70.2
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 6.0e-41 171.0 131 71.0
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 6.0e-41 171.0 131 68.7
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 6.0e-41 171.0 131 67.2
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 6.0e-41 171.0 131 65.6
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 7.8e-41 170.6 131 65.6
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.0e-40 170.2 131 68.7
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.0e-40 170.2 134 69.4
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 1.0e-40 170.2 131 68.7
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.0e-40 170.2 131 65.6
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.0e-40 170.2 131 65.6
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.0e-40 170.2 131 65.6
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.3e-40 169.9 131 64.9
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.3e-40 169.9 131 68.7
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.7e-40 169.5 131 69.5
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.7e-40 169.5 134 66.4
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 2.3e-40 169.1 134 67.2
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 2.3e-40 169.1 131 67.9
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 2.3e-40 169.1 131 68.7
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.3e-40 169.1 134 69.4
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.3e-40 169.1 130 69.2
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 3.0e-40 168.7 131 63.4
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 3.0e-40 168.7 131 70.2
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 3.9e-40 168.3 135 65.2
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.9e-40 168.3 131 67.2
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 3.9e-40 168.3 131 69.5
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 5.1e-40 167.9 131 69.5
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 5.1e-40 167.9 131 69.5
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 5.1e-40 167.9 134 69.4
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 5.1e-40 167.9 131 69.5
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 5.1e-40 167.9 131 66.4
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.1e-40 167.9 131 68.7
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.1e-40 167.9 131 68.7
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 6.6e-40 167.5 131 67.9
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 8.7e-40 167.2 131 67.2
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.1e-39 166.8 131 67.2
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.5e-39 166.4 134 67.9
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 2.5e-39 165.6 131 67.9
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 2.5e-39 165.6 132 65.9
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 3.3e-39 165.2 132 65.2
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 4.3e-39 164.9 131 65.6
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 5.6e-39 164.5 134 67.2
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 5.6e-39 164.5 132 65.9
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 5.6e-39 164.5 144 61.8
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 7.3e-39 164.1 131 67.9
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 9.6e-39 163.7 133 66.2
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 9.6e-39 163.7 130 68.5
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 9.6e-39 163.7 131 67.2
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.8e-38 162.2 139 64.0
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 2.8e-38 162.2 131 64.9
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 3.6e-38 161.8 136 64.7
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 6.2e-38 161.0 132 62.9
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 8.1e-38 160.6 131 62.6
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 8.1e-38 160.6 131 62.6
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.1e-37 160.2 131 62.6
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.1e-37 160.2 131 62.6
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.8e-37 159.5 134 62.7
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.8e-37 159.5 132 62.9
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 6.9e-37 157.5 134 64.2
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 6.9e-37 157.5 136 63.2
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 6.9e-37 157.5 131 65.6
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 6.9e-37 157.5 130 65.4
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 6.9e-37 157.5 134 66.4
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 1.2e-36 156.8 132 62.9
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.5e-36 156.4 132 62.9
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.5e-36 156.4 134 63.4
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.6e-36 155.6 130 66.2
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.4e-36 155.2 130 66.2
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.4e-36 154.8 130 66.2
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.4e-36 154.8 131 64.1
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 4.4e-36 154.8 131 64.1
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 4.4e-36 154.8 131 60.3
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 5.8e-36 154.5 130 66.2
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.9e-36 153.7 131 65.6
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.7e-35 152.9 130 65.4
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.2e-35 152.5 143 58.0
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.9e-35 152.1 131 62.6
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 6.4e-35 151.0 131 61.8
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 1.4e-34 149.8 134 62.7
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.4e-34 149.8 131 59.5
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.4e-34 149.1 140 59.3
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 3.2e-34 148.7 131 61.1
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 4.2e-34 148.3 131 60.3
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 7.1e-34 147.5 137 59.1
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 9.3e-34 147.1 138 58.7
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 6.0e-33 144.4 131 59.5
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 2.5e-31 139.0 134 58.2
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 5.6e-31 137.9 131 57.3
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.3e-30 136.7 100 73.0
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 8.1e-30 134.0 132 58.3
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.3e-27 126.7 98 64.3
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 6.4e-27 124.4 134 51.5
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 5.5e-26 121.3 132 54.5
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 7.4e-23 110.9 131 45.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.3e-22 110.2 101 64.4
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.1e-22 109.4 129 48.8
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.1e-21 107.1 155 46.5
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 3.4e-20 102.1 76 65.8
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 7.6e-20 100.9 82 61.0
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 3.2e-18 95.5 136 39.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 9.0e-13 77.4 53 73.6
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 5.9e-12 74.7 103 47.6
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.3e-11 73.6 102 41.2
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.4e-10 70.1 117 39.3
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 5.5e-10 68.2 51 64.7
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 7.9e-09 64.3 137 33.6
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.9e-08 62.0 131 33.6
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.1e-07 60.5 142 31.0
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 4.3e-07 58.5 41 70.7
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 5.7e-07 58.2 138 30.4
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 5.7e-07 58.2 49 59.2
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 2.2e-06 56.2 77 48.1
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 2.8e-06 55.8 64 53.1
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 8.2e-06 54.3 50 56.0


User provided reference genes

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