Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 3562.3 1798 100.0
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2897.1 1828 80.5
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2872.8 1837 79.9
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2851.2 1849 78.9
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2626.3 1836 72.5
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2610.9 1831 72.4
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2538.5 1836 69.2
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2525.7 1844 68.6
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2485.3 1839 67.4
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2479.5 1840 67.6
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2478.4 1840 67.2
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2471.8 1839 67.3
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2470.3 1840 67.4
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2461.8 1841 67.1
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2459.5 1841 66.6
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2458.7 1839 67.3
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2445.2 1842 66.3
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2439.1 1839 66.5
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2438.7 1853 66.2
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2429.4 1839 66.5
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2428.7 1858 66.4
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2427.1 1842 66.0
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2427.1 1841 66.7
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2422.9 1842 65.9
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2419.8 1844 65.8
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2417.9 1842 65.7
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2417.9 1826 67.0
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2416.7 1837 66.1
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2416.0 1780 68.0
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2415.2 1841 65.7
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2409.0 1949 63.5
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2400.9 1841 65.6
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2392.8 1977 61.9
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2391.7 1783 68.0
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2385.5 1835 65.9
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2382.1 1841 64.8
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2380.9 1843 64.8
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2379.0 1840 65.4
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2377.1 1837 64.7
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2374.4 1845 64.7
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2374.0 1839 64.4
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2371.7 1839 64.4
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2371.3 1843 64.7
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2369.0 1842 64.6
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2365.1 1843 64.1
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2364.3 1838 64.7
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2357.4 1838 64.6
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2357.0 1843 64.7
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2356.3 1837 64.5
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2355.5 1840 64.4
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2355.1 1838 64.6
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2354.3 1839 64.9
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2353.9 1829 66.0
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2352.0 1841 63.9
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2351.6 1838 64.5
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2350.9 1839 64.6
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2350.9 1841 63.9
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2350.5 1837 64.4
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2350.5 1881 64.9
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2350.5 1842 63.8
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2349.7 1842 63.6
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2348.9 1846 64.8
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2347.8 1834 64.8
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2346.6 1845 63.8
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2346.2 1839 64.4
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2342.4 1834 64.9
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2342.4 1842 63.9
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2338.1 1842 64.2
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2337.0 1837 63.4
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2334.3 1838 63.9
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2327.7 1922 61.9
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2324.7 1836 63.5
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2323.9 1839 63.4
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2323.5 1840 63.9
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2323.1 1757 65.9
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2320.4 1834 64.3
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2298.9 1781 64.7
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2296.9 1822 63.1
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2276.5 1914 60.8
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2268.0 1867 62.3
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2259.2 1845 62.2
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2254.9 1832 62.2
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2251.9 1697 67.6
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2238.8 1835 61.6
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2218.7 1811 61.7
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2205.6 1847 61.1
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2182.9 1881 59.7
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2182.5 1967 58.1
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2178.3 1845 59.3
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2154.4 1650 65.9
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2141.3 1837 60.4
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2134.4 1929 58.3
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2109.7 1841 58.2
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2108.6 1586 67.6
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2095.1 1671 63.6
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2014.6 1832 56.0
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1952.2 1444 66.4
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 1948.7 1523 64.3
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1941.8 1681 59.0
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 1932.5 1723 58.9
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1651.3 1469 57.7
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1626.7 1138 69.0
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1584.3 1813 48.4
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1575.1 1259 63.5
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1351.3 947 69.0
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1350.9 1947 39.9
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1337.4 1876 40.5
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1333.2 1877 40.9
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1238.8 1897 37.7
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1169.5 1858 37.6
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1162.5 1856 37.2
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1132.9 1828 36.6
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.9e-299 1033.5 1847 34.7
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 1.4e-294 1017.3 883 60.5
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 2.7e-293 1013.1 944 57.5
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 2.5e-291 1006.5 721 68.4
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 3.6e-269 932.9 1986 32.1
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 2.9e-247 860.1 686 60.9
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 8.0e-245 852.0 1144 45.5
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 3.0e-175 620.9 522 62.3
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.3e-154 552.4 624 53.2
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.0e-135 488.0 459 51.9
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 4.9e-133 480.7 633 46.0
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 1.6e-107 396.0 1948 23.3
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 3.6e-104 384.8 325 60.6
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.0e-98 365.2 471 41.4
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 6.6e-98 364.0 250 76.4
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 2.5e-97 362.1 361 56.2
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.4e-92 345.5 300 58.0
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 2.5e-89 335.5 220 67.7
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 9.6e-89 333.6 330 54.2
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.3e-82 312.4 359 52.4
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 1.5e-81 309.7 1934 22.2
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 4.8e-72 278.1 343 49.0
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 9.0e-71 273.9 218 57.8
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 4.6e-59 235.0 166 63.9
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 4.0e-34 152.1 157 57.3
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 5.2e-34 151.8 117 69.2
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.4e-31 143.7 210 41.4
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 1.3e-29 137.1 658 23.7
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 7.0e-23 114.8 833 20.8
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 2.1e-19 103.2 74 59.5
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 4.7e-19 102.1 65 78.5
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 4.0e-18 99.0 72 69.4
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 6.8e-18 98.2 75 56.0
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 4.9e-16 92.0 139 44.6
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 8.3e-16 91.3 75 65.3
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 1.1e-15 90.9 89 60.7
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 1.3e-13 84.0 83 59.0
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 6.1e-11 75.1 73 46.6
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 6.8e-10 71.6 96 35.4
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 1.2e-09 70.9 45 73.3
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 4.4e-09 68.9 146 37.7
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 4.9e-08 65.5 61 63.9
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 1.1e-07 64.3 67 46.3


User provided reference genes

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