Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 5.9e-42 173.7 83 100.0
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.3e-29 131.3 76 81.6
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 2.0e-26 122.1 74 75.7
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 2.0e-26 122.1 78 76.9
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 4.5e-26 120.9 77 76.6
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 4.2e-24 114.4 83 65.1
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 7.2e-24 113.6 77 68.8
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.6e-23 111.3 76 67.1
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 3.6e-23 111.3 76 72.4
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 6.1e-23 110.5 77 67.5
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 3.0e-22 108.2 87 64.4
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 3.0e-22 108.2 71 67.6
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 4.0e-22 107.8 87 64.4
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 4.0e-22 107.8 62 79.0
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 5.2e-22 107.5 83 62.7
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 5.2e-22 107.5 67 74.6
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.1e-21 106.3 76 65.8
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.1e-21 106.3 62 75.8
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 1.1e-21 106.3 71 67.6
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 2.0e-21 105.5 66 74.2
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 2.0e-21 105.5 68 70.6
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 2.0e-21 105.5 71 67.6
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 2.6e-21 105.1 69 69.6
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 2.6e-21 105.1 67 68.7
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.6e-21 105.1 67 71.6
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.6e-21 105.1 67 71.6
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.6e-21 105.1 67 73.1
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 3.3e-21 104.8 81 63.0
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 3.3e-21 104.8 81 63.0
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.3e-21 104.8 66 74.2
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 3.3e-21 104.8 67 71.6
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 3.3e-21 104.8 68 70.6
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 3.3e-21 104.8 71 67.6
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 3.3e-21 104.8 61 77.0
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.4e-21 104.4 67 70.1
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 4.4e-21 104.4 81 63.0
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 4.4e-21 104.4 62 74.2
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 4.4e-21 104.4 74 67.6
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 4.4e-21 104.4 71 66.2
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 5.7e-21 104.0 62 72.6
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 5.7e-21 104.0 60 73.3
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 5.7e-21 104.0 67 73.1
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 5.7e-21 104.0 67 71.6
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 7.5e-21 103.6 56 82.1
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 7.5e-21 103.6 62 74.2
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 7.5e-21 103.6 71 66.2
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 7.5e-21 103.6 67 71.6
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 7.5e-21 103.6 66 71.2
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 9.7e-21 103.2 73 68.5
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 9.7e-21 103.2 50 88.0
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 9.7e-21 103.2 55 80.0
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 9.7e-21 103.2 67 70.1
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 9.7e-21 103.2 77 66.2
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.3e-20 102.8 50 90.0
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 1.3e-20 102.8 69 68.1
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.3e-20 102.8 69 68.1
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.3e-20 102.8 71 67.6
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 1.3e-20 102.8 67 70.1
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 1.3e-20 102.8 50 88.0
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 1.7e-20 102.4 55 80.0
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 1.7e-20 102.4 68 67.6
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.7e-20 102.4 68 66.2
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 1.7e-20 102.4 80 62.5
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.7e-20 102.4 50 88.0
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 1.7e-20 102.4 49 89.8
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.7e-20 102.4 62 74.2
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 2.2e-20 102.1 68 72.1
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.2e-20 102.1 57 77.2
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.2e-20 102.1 61 80.3
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.2e-20 102.1 55 81.8
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.2e-20 102.1 62 74.2
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.2e-20 102.1 50 88.0
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.2e-20 102.1 75 62.7
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 2.8e-20 101.7 81 61.7
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 2.8e-20 101.7 61 75.4
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.7e-20 101.3 70 65.7
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 3.7e-20 101.3 78 64.1
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 3.7e-20 101.3 66 72.7
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 4.8e-20 100.9 65 70.8
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 4.8e-20 100.9 81 63.0
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 4.8e-20 100.9 73 63.0
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 4.8e-20 100.9 50 88.0
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 4.8e-20 100.9 50 88.0
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 4.8e-20 100.9 50 88.0
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 4.8e-20 100.9 50 88.0
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 6.3e-20 100.5 50 88.0
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 6.3e-20 100.5 54 77.8
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 6.3e-20 100.5 61 73.8
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 6.3e-20 100.5 50 88.0
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 6.3e-20 100.5 50 88.0
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 6.3e-20 100.5 50 86.0
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 8.2e-20 100.1 70 65.7
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 8.2e-20 100.1 81 60.5
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 8.2e-20 100.1 71 70.4
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 8.2e-20 100.1 67 68.7
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 8.2e-20 100.1 69 65.2
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.1e-19 99.8 67 68.7
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 1.1e-19 99.8 61 75.4
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.1e-19 99.8 56 78.6
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.4e-19 99.4 70 65.7
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 1.4e-19 99.4 62 71.0
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 1.4e-19 99.4 57 77.2
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.4e-19 99.4 66 69.7
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.4e-19 99.4 54 79.6
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 1.4e-19 99.4 48 89.6
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 1.8e-19 99.0 65 70.8
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 1.8e-19 99.0 48 87.5
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 2.4e-19 98.6 88 56.8
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 3.1e-19 98.2 50 84.0
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 3.1e-19 98.2 53 83.0
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 3.1e-19 98.2 71 63.4
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 4.1e-19 97.8 57 75.4
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 4.1e-19 97.8 54 79.6
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 7.0e-19 97.1 90 56.7
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 9.1e-19 96.7 75 60.0
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.2e-18 96.3 69 68.1
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 1.2e-18 96.3 53 77.4
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.2e-18 96.3 71 62.0
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 2.0e-18 95.5 52 86.5
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.5e-18 94.7 54 75.9
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 3.5e-18 94.7 50 80.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 5.9e-18 94.0 50 84.0
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 5.9e-18 94.0 46 89.1
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 5.9e-18 94.0 46 89.1
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 5.9e-18 94.0 46 89.1
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 7.7e-18 93.6 54 74.1
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 7.7e-18 93.6 54 74.1
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 7.7e-18 93.6 54 74.1
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 1.0e-17 93.2 53 71.7
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 1.0e-17 93.2 53 71.7
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.0e-17 93.2 50 80.0
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.3e-17 92.8 50 80.0
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.3e-17 92.8 71 69.0
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 2.2e-17 92.0 43 90.7
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 2.2e-17 92.0 54 74.1
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 2.2e-17 92.0 54 74.1
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.2e-17 92.0 54 75.9
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 2.9e-17 91.7 56 73.2
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 6.5e-17 90.5 70 61.4
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 6.5e-17 90.5 46 84.8
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 6.5e-17 90.5 46 84.8
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 3.2e-16 88.2 53 73.6
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 4.2e-16 87.8 63 61.9
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 4.2e-16 87.8 63 61.9
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 7.2e-16 87.0 47 74.5
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 9.4e-16 86.7 48 72.9
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 6.1e-15 84.0 60 65.0
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 2.3e-14 82.0 42 78.6
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 1.2e-13 79.7 60 65.0
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 3.4e-13 78.2 43 76.7
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 7.0e-11 70.5 50 70.0
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 9.1e-11 70.1 52 69.2
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 1.2e-07 59.7 62 51.6
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 1.4e-06 56.2 43 65.1


User provided reference genes

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