Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 0.0e+00 1080.1 525 100.0
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 5.5e-263 910.6 613 76.0
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 6.4e-251 870.5 552 80.4
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 1.9e-250 869.0 537 81.0
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 1.2e-246 856.3 540 78.7
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 1.4e-245 852.8 539 78.7
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 3.1e-245 851.7 536 79.1
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 8.9e-245 850.1 534 79.8
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 8.9e-245 850.1 541 78.2
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 2.6e-244 848.6 541 78.0
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 4.4e-244 847.8 545 77.2
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 8.3e-243 843.6 537 78.8
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 8.3e-243 843.6 537 78.8
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 5.4e-242 840.9 540 76.9
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 7.1e-242 840.5 536 78.4
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.2e-241 839.7 539 78.3
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 1.6e-241 839.3 541 77.6
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 6.0e-241 837.4 539 77.7
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 1.0e-240 836.6 536 78.5
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 5.1e-240 834.3 536 77.8
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 1.9e-239 832.4 539 76.8
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.5e-239 832.0 539 77.2
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 5.6e-239 830.9 552 74.8
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 2.8e-238 828.6 533 77.9
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 4.7e-238 827.8 540 76.7
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.7e-238 827.8 535 76.6
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 1.4e-237 826.2 537 77.5
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 1.8e-237 825.9 544 73.5
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.5e-236 822.8 536 75.0
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.5e-236 822.8 593 70.3
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 2.0e-236 822.4 593 70.2
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 4.4e-236 821.2 536 75.7
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 4.4e-236 821.2 536 76.1
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 5.8e-236 820.8 577 73.1
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 9.9e-236 820.1 536 75.6
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 9.9e-236 820.1 539 76.6
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 1.3e-235 819.7 537 76.7
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 1.7e-235 819.3 536 75.7
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 1.7e-235 819.3 536 75.7
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 2.2e-235 818.9 540 76.3
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 2.9e-235 818.5 537 76.4
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 2.9e-235 818.5 537 76.4
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 3.7e-235 818.1 537 75.6
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 4.9e-235 817.8 537 76.2
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 6.4e-235 817.4 535 75.9
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 1.9e-234 815.8 536 75.0
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 3.2e-234 815.1 539 75.9
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 7.1e-234 813.9 536 75.4
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 7.1e-234 813.9 534 76.4
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 9.2e-234 813.5 535 75.7
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 9.2e-234 813.5 534 75.3
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 9.2e-234 813.5 538 74.7
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 2.1e-233 812.4 540 73.3
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 4.6e-233 811.2 539 73.8
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 4.6e-233 811.2 539 75.0
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 6.0e-233 810.8 538 74.5
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 1.3e-232 809.7 536 75.2
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 1.3e-232 809.7 531 75.7
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 3.9e-232 808.1 541 74.9
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 1.1e-231 806.6 538 74.5
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 1.9e-231 805.8 533 76.0
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 5.6e-231 804.3 538 75.8
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 7.3e-231 803.9 536 73.3
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 1.2e-230 803.1 535 74.8
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 1.6e-230 802.7 534 74.9
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 3.6e-230 801.6 567 70.9
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 6.2e-230 800.8 536 73.1
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 1.8e-229 799.3 534 74.3
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 4.0e-229 798.1 540 72.8
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 6.8e-229 797.3 533 75.2
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 2.6e-228 795.4 532 74.8
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 2.2e-227 792.3 541 73.8
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.8e-227 791.6 539 72.2
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 1.4e-226 789.6 541 71.2
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 5.4e-226 787.7 552 72.3
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.2e-225 786.6 540 71.7
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 7.8e-225 783.9 537 73.7
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 1.6e-217 759.6 630 64.6
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 2.1e-217 759.2 531 71.9
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.3e-216 756.5 543 73.3
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.3e-216 756.5 524 73.5
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 7.3e-215 750.7 537 71.7
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 7.1e-210 734.2 536 68.3
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 2.1e-209 732.6 536 68.1
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 1.6e-206 723.0 534 69.7
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 2.5e-202 709.1 549 67.6
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 3.5e-201 705.3 517 69.8
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 6.0e-201 704.5 534 68.5
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 6.5e-195 684.5 537 67.4
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 2.1e-193 679.5 404 80.2
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 8.2e-190 667.5 452 73.2
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 4.1e-189 665.2 747 51.4
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 1.9e-186 656.4 577 60.8
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 4.7e-177 625.2 536 63.1
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 7.9e-177 624.4 540 61.7
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 1.3e-174 617.1 376 81.1
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 6.3e-174 614.8 377 80.6
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 1.5e-167 593.6 543 54.9
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 3.3e-167 592.4 439 68.1
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 1.6e-164 583.6 536 54.9
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 9.1e-157 557.8 531 52.7
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.7e-153 546.2 365 74.5
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 1.1e-141 507.7 385 68.1
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 2.9e-134 483.0 484 52.9
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 3.7e-134 482.6 500 51.0
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 4.9e-134 482.3 373 64.1
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.0e-123 448.0 356 61.5
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 4.7e-113 412.5 271 76.0
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 2.2e-110 403.7 269 75.5
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 1.3e-105 387.9 371 58.2
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 2.4e-101 373.6 630 37.5
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 4.6e-100 369.4 320 62.8
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 1.2e-92 344.7 220 76.4
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 9.0e-88 328.6 272 64.0
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 3.4e-71 273.5 401 39.4
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.8e-67 261.2 160 76.2
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.6e-63 247.3 152 80.9
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.9e-61 241.1 152 75.7
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.2e-61 240.0 235 55.7
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 5.5e-61 239.6 543 31.9
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 7.2e-61 239.2 159 73.6
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 6.1e-60 236.1 189 66.7
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 1.0e-59 235.3 164 70.1
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 3.9e-59 233.4 596 29.5
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 2.0e-55 221.1 139 77.7
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 3.0e-51 207.2 144 72.9
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 6.3e-49 199.5 155 67.1
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 7.0e-48 196.1 136 70.6
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.0e-47 194.5 155 65.2
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 3.5e-47 193.7 235 48.1
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 2.2e-46 191.0 163 55.2
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 1.0e-43 182.2 817 22.5
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 2.3e-43 181.0 247 40.5
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.3e-41 175.3 109 77.1
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 3.5e-39 167.2 186 50.5
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 1.5e-34 151.8 85 87.1
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 3.4e-34 150.6 115 65.2
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 2.8e-12 77.8 106 46.2
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 6.2e-12 76.6 78 52.6
SEGI_13361 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 3.4e-10 70.9 76 53.9
CBR_g34498 Chara braunii HOM05D003088 ORTHO05D006665 6.0e-07 60.1 74 45.9
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.0e-06 59.3 53 58.5
CiPaw.01G151200 Carya illinoinensis HOM05D003301 ORTHO05D003665 3.0e-06 57.8 196 21.9
ClCG07G010240 Citrullus lanatus HOM05D005139 ORTHO05D006125 5.1e-06 57.0 70 51.4
Phvul.004G048400 Phaseolus vulgaris HOM05D003301 ORTHO05D003665 8.6e-06 56.2 252 20.6


User provided reference genes

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