Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 1.3e-180 636.3 339 100.0
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 5.7e-144 514.6 334 80.5
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.4e-137 493.4 339 78.2
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.8e-134 483.0 338 76.0
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 3.3e-115 419.1 270 78.5
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 5.6e-115 418.3 276 78.3
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.2e-114 417.2 278 77.3
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 2.1e-114 416.4 271 77.5
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 2.8e-114 416.0 282 74.8
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 3.1e-113 412.5 279 75.3
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 5.2e-113 411.8 305 72.8
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 8.9e-113 411.0 270 78.5
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 1.5e-112 410.2 262 78.6
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 2.0e-112 409.8 260 78.8
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 2.6e-112 409.5 305 68.9
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.4e-112 409.1 260 78.5
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 3.4e-112 409.1 307 72.0
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 4.4e-112 408.7 310 69.4
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 9.9e-112 407.5 260 78.5
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 9.9e-112 407.5 261 78.5
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 9.9e-112 407.5 272 76.1
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.3e-111 407.1 260 78.1
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.7e-111 406.8 262 77.5
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 2.2e-111 406.4 269 77.7
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 2.9e-111 406.0 310 71.0
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 2.9e-111 406.0 281 74.4
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 3.7e-111 405.6 318 67.9
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 4.9e-111 405.2 261 78.5
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 6.4e-111 404.8 312 67.6
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 2.4e-110 402.9 282 72.7
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 3.2e-110 402.5 312 68.6
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 5.4e-110 401.7 256 79.3
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 9.2e-110 401.0 281 72.6
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 9.2e-110 401.0 284 72.9
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 1.2e-109 400.6 280 73.6
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.2e-109 400.6 355 62.5
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 1.6e-109 400.2 281 73.0
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.6e-109 400.2 260 76.5
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.6e-109 400.2 262 76.7
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.6e-109 400.2 261 77.4
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 2.1e-109 399.8 295 71.5
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 2.7e-109 399.4 260 76.5
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 2.7e-109 399.4 287 70.7
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 3.5e-109 399.1 327 66.1
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 3.5e-109 399.1 260 77.3
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 4.6e-109 398.7 261 78.5
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.0e-108 397.5 308 69.2
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.0e-108 397.5 260 75.8
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 1.3e-108 397.1 340 64.1
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 1.3e-108 397.1 256 77.3
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.0e-108 396.0 335 65.4
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 3.9e-108 395.6 310 67.4
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 3.9e-108 395.6 356 63.8
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 8.6e-108 394.4 270 73.3
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.5e-107 393.7 263 76.0
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.5e-107 393.7 334 63.5
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 1.5e-107 393.7 329 67.2
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 3.3e-107 392.5 261 74.7
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 4.3e-107 392.1 332 63.9
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 7.3e-107 391.3 257 76.3
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 9.5e-107 391.0 329 64.4
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 1.2e-106 390.6 285 71.6
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 2.1e-106 389.8 302 66.6
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 3.6e-106 389.0 267 73.0
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 3.6e-106 389.0 329 63.5
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 1.1e-105 387.5 310 67.4
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.4e-105 387.1 302 68.9
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 3.1e-105 386.0 335 62.7
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 4.0e-105 385.6 299 66.2
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 6.8e-105 384.8 267 73.0
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 8.9e-105 384.4 292 67.8
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 8.9e-105 384.4 313 64.5
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.5e-104 383.6 287 69.0
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 2.0e-104 383.3 287 69.0
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 2.6e-104 382.9 263 73.0
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 4.4e-104 382.1 263 74.9
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 4.4e-104 382.1 272 71.3
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 7.6e-104 381.3 272 71.0
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 9.9e-104 380.9 313 64.9
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 4.9e-103 378.6 336 61.0
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 4.2e-102 375.6 313 63.3
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 7.1e-102 374.8 334 60.5
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 9.2e-102 374.4 327 62.4
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 9.2e-102 374.4 297 66.3
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 9.2e-102 374.4 282 70.6
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 1.6e-101 373.6 262 71.4
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 4.6e-101 372.1 261 72.0
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 7.8e-101 371.3 354 58.8
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 8.7e-100 367.9 303 64.0
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 5.6e-99 365.2 371 56.6
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 4.7e-98 362.1 273 70.0
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 2.4e-97 359.8 234 77.8
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 3.1e-97 359.4 335 62.1
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 7.6e-96 354.8 237 75.5
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 7.6e-96 354.8 237 75.5
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 3.8e-95 352.4 282 64.5
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.9e-94 350.1 297 64.6
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 1.5e-91 340.5 257 66.1
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 2.8e-90 336.3 233 72.1
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 2.6e-88 329.7 245 71.8
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 3.8e-87 325.9 462 44.8
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 3.0e-84 316.2 258 67.4
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 5.1e-84 315.5 201 78.1
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 4.3e-83 312.4 253 60.9
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 2.1e-82 310.1 221 73.3
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 4.8e-82 308.9 255 66.3
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.2e-77 294.3 263 57.8
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 7.9e-77 291.6 245 60.0
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.3e-76 290.8 232 68.1
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 8.7e-76 288.1 248 56.9
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 2.5e-75 286.6 243 61.3
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 8.2e-74 281.6 181 77.3
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 1.7e-71 273.9 295 53.6
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.8e-68 263.8 241 55.2
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 5.1e-68 262.3 291 51.9
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.6e-61 239.6 193 67.9
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 5.3e-57 225.7 203 64.5
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.3e-55 221.1 241 50.6
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 2.2e-55 220.3 236 50.0
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 7.9e-53 211.8 146 72.6
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 2.8e-50 203.4 156 64.7
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 1.3e-47 194.5 187 56.1
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.4e-44 184.5 323 38.7
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 3.0e-44 183.3 276 40.9
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.7e-26 124.4 87 73.6
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 7.2e-22 109.0 91 64.8
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 2.6e-19 100.5 141 46.8
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 4.9e-18 96.3 72 62.5
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 2.9e-15 87.0 57 75.4
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 3.9e-15 86.7 52 82.7
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 8.6e-15 85.5 62 67.7
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 9.2e-09 65.5 48 56.2
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 1.6e-08 64.7 43 69.8
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 7.8e-08 62.4 87 47.1
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 1.0e-07 62.0 94 37.2
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 1.3e-07 61.6 40 62.5
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 3.0e-07 60.5 208 28.8


User provided reference genes

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