Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 3.6e-68 261.5 138 100.0
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 8.3e-41 170.6 135 68.1
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 1.8e-40 169.5 135 68.1
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 8.5e-38 160.6 135 65.2
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 1.2e-34 150.2 115 71.3
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 4.1e-32 141.7 161 54.0
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 1.0e-30 137.1 139 60.4
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 6.3e-25 117.9 138 50.0
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 1.1e-24 117.1 133 54.1
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 3.2e-24 115.5 126 54.0
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 7.0e-24 114.4 140 48.6
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.6e-23 113.2 126 54.0
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.6e-23 113.2 126 54.0
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 2.9e-22 109.0 126 48.4
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 8.6e-22 107.5 127 52.0
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 3.3e-21 105.5 123 49.6
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 4.3e-21 105.1 127 48.8
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 1.2e-20 103.6 138 49.3
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.6e-20 103.2 127 51.2
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 4.7e-20 101.7 127 50.4
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 8.0e-20 100.9 126 48.4
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 8.0e-20 100.9 135 47.4
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 1.0e-19 100.5 126 48.4
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 1.8e-19 99.8 134 45.5
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.8e-19 99.8 138 45.7
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 3.1e-19 99.0 134 45.5
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 5.2e-19 98.2 117 50.4
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 8.9e-19 97.4 113 50.4
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.5e-18 96.7 128 47.7
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 2.6e-18 95.9 113 50.4
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 3.4e-18 95.5 126 46.0
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 5.8e-18 94.7 115 52.2
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.7e-17 93.2 126 46.0
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 2.2e-17 92.8 138 44.2
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 2.9e-17 92.4 126 44.4
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 3.7e-17 92.0 139 44.6
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 1.1e-16 90.5 140 41.4
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 1.1e-16 90.5 125 45.6
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 1.1e-16 90.5 137 45.3
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 1.4e-16 90.1 127 43.3
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 1.9e-16 89.7 140 41.4
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 4.1e-16 88.6 140 43.6
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 4.1e-16 88.6 127 44.1
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 7.0e-16 87.8 139 46.8
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 9.2e-16 87.4 125 46.4
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 9.2e-16 87.4 129 44.2
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 1.2e-15 87.0 124 42.7
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.7e-15 85.9 130 48.5
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 3.5e-15 85.5 131 44.3
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 3.5e-15 85.5 105 48.6
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 4.6e-15 85.1 137 43.8
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 6.0e-15 84.7 124 46.0
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 7.8e-15 84.3 125 44.8
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.0e-14 84.0 137 40.9
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.0e-14 84.0 128 43.0
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 1.3e-14 83.6 140 44.3
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 1.3e-14 83.6 136 44.9
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.7e-14 83.2 139 43.2
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 1.7e-14 83.2 134 39.6
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 2.3e-14 82.8 124 40.3
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 2.3e-14 82.8 122 43.4
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 3.9e-14 82.0 135 40.0
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 1.5e-13 80.1 128 41.4
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.9e-13 79.7 127 44.9
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 1.9e-13 79.7 122 40.2
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 2.5e-13 79.3 123 43.9
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 5.6e-13 78.2 136 40.4
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 7.3e-13 77.8 124 44.4
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 7.3e-13 77.8 127 44.1
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 1.2e-12 77.0 103 48.5
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 1.6e-12 76.6 115 46.1
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.6e-12 76.6 129 42.6
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 2.8e-12 75.9 128 44.5
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 2.8e-12 75.9 126 42.1
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 3.6e-12 75.5 132 39.4
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 3.6e-12 75.5 137 36.5
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 3.6e-12 75.5 100 44.0
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 8.1e-12 74.3 126 40.5
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 8.1e-12 74.3 99 47.5
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.8e-11 73.2 124 39.5
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.8e-11 73.2 131 42.0
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 1.8e-11 73.2 123 39.8
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 6.8e-11 71.2 111 42.3
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 6.8e-11 71.2 111 42.3
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 6.8e-11 71.2 124 38.7
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 6.8e-11 71.2 124 38.7
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 8.9e-11 70.9 122 39.3
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.5e-10 70.1 112 39.3
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.5e-10 70.1 112 39.3
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 1.5e-10 70.1 122 38.5
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 3.4e-10 68.9 114 43.9
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 1.3e-09 67.0 122 41.8
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 1.3e-09 67.0 122 41.8
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 1.3e-09 67.0 131 36.6
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 1.3e-09 67.0 83 43.4
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 2.2e-09 66.2 139 38.1
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 3.7e-09 65.5 76 44.7
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 4.9e-09 65.1 78 44.9
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 4.9e-09 65.1 78 44.9
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 6.4e-09 64.7 96 43.8
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 8.3e-09 64.3 126 38.1
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 8.3e-09 64.3 142 37.3
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 1.4e-08 63.5 98 39.8
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 1.9e-08 63.2 76 42.1
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 1.9e-08 63.2 62 51.6
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.9e-08 63.2 125 35.2
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 2.4e-08 62.8 74 44.6
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 4.1e-08 62.0 98 38.8
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 4.1e-08 62.0 123 36.6
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 5.4e-08 61.6 132 38.6
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 7.1e-08 61.2 148 35.8
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.6e-07 58.5 134 32.8
Sc09g0004100 Simmondsia chinensis HOM05D000509 ORTHO05D006393 4.6e-07 58.5 98 38.8
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 6.0e-07 58.2 119 38.7
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 7.8e-07 57.8 116 39.7
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.0e-06 57.4 101 42.6
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 3.9e-06 55.5 133 36.8
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 3.9e-06 55.5 102 36.3
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 8.6e-06 54.3 113 35.4
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 8.6e-06 54.3 87 41.4
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 8.6e-06 54.3 79 45.6


User provided reference genes

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