Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 4.7e-230 800.8 402 100.0
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 6.8e-144 514.6 420 65.5
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 3.4e-143 512.3 398 67.3
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 4.4e-127 458.8 377 62.6
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 3.2e-125 452.6 368 60.6
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 1.2e-124 450.7 342 63.2
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 6.0e-124 448.4 347 64.3
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.0e-123 447.6 356 64.0
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 3.0e-123 446.0 369 60.2
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 4.3e-122 442.2 343 63.8
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 5.6e-122 441.8 333 64.3
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 5.6e-122 441.8 333 64.3
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 9.5e-122 441.0 341 62.5
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 9.5e-122 441.0 344 61.0
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 2.1e-121 439.9 330 63.3
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 2.1e-121 439.9 355 60.6
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 2.1e-121 439.9 349 64.5
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 3.6e-121 439.1 364 59.3
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 3.6e-121 439.1 347 64.3
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 6.2e-121 438.3 366 60.9
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 8.1e-121 438.0 355 60.8
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.1e-120 437.6 368 59.2
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 1.1e-120 437.6 347 62.5
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 4.0e-120 435.6 325 63.7
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 5.2e-120 435.3 369 58.8
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 6.8e-120 434.9 369 59.6
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 8.9e-120 434.5 357 61.1
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 1.2e-119 434.1 356 60.1
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 2.6e-119 433.0 354 60.7
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 3.4e-119 432.6 341 63.3
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 5.8e-119 431.8 396 57.1
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 1.3e-118 430.6 368 58.2
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 1.7e-118 430.3 345 61.7
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 2.2e-118 429.9 367 58.9
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 2.9e-118 429.5 345 61.2
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 2.9e-118 429.5 345 62.3
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 4.9e-118 428.7 355 63.7
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 1.1e-117 427.6 354 59.3
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 3.2e-117 426.0 348 60.1
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 4.1e-117 425.6 345 61.4
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 7.1e-117 424.9 368 57.9
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 2.1e-116 423.3 347 60.2
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 2.7e-116 422.9 355 60.8
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 4.6e-116 422.2 344 59.9
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 1.3e-115 420.6 354 59.0
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 2.3e-115 419.9 345 60.0
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 2.3e-115 419.9 345 60.3
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 5.1e-115 418.7 335 63.9
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 1.5e-114 417.2 386 58.0
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.5e-114 416.4 356 58.7
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 3.3e-114 416.0 344 59.3
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 5.6e-114 415.2 351 60.4
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 7.3e-114 414.8 309 65.4
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 9.6e-114 414.5 362 58.6
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 4.7e-113 412.1 393 55.0
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 1.8e-112 410.2 385 56.4
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 6.9e-112 408.3 329 59.3
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 6.9e-112 408.3 333 58.6
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 8.9e-112 407.9 341 60.1
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 1.5e-111 407.1 362 56.9
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 3.4e-111 406.0 358 57.8
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 5.8e-111 405.2 359 57.4
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 1.3e-110 404.1 363 57.3
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.7e-110 403.7 353 58.1
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 4.9e-110 402.1 361 55.7
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 8.4e-110 401.4 335 59.1
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 1.1e-109 401.0 326 62.3
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 1.4e-109 400.6 353 57.8
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 4.2e-109 399.1 346 57.8
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 4.2e-109 399.1 337 57.6
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 7.1e-109 398.3 359 56.8
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 2.1e-108 396.7 344 57.0
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 3.5e-108 396.0 294 62.9
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 3.5e-108 396.0 355 63.4
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.7e-107 393.7 316 61.1
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 3.9e-107 392.5 346 56.6
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 6.6e-107 391.7 349 58.2
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 1.1e-106 391.0 347 57.3
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 1.9e-106 390.2 347 58.2
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 1.9e-106 390.2 292 63.4
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 3.3e-106 389.4 285 63.5
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 4.3e-106 389.0 347 57.9
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 4.3e-106 389.0 349 57.0
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 1.3e-105 387.5 304 62.5
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.6e-105 387.1 355 62.3
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 2.8e-105 386.3 341 57.5
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 2.4e-104 383.3 350 56.0
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 1.2e-103 380.9 364 53.8
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 2.6e-103 379.8 343 57.7
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 1.7e-102 377.1 364 53.6
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 7.1e-101 371.7 356 55.6
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 2.3e-99 366.7 331 56.8
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 2.5e-98 363.2 242 69.8
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 7.4e-98 361.7 350 54.6
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 1.7e-94 350.5 342 54.4
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 7.4e-90 335.1 344 53.5
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 1.6e-89 334.0 262 61.1
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 5.3e-88 328.9 268 57.8
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.8e-83 313.9 287 54.7
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 5.3e-80 302.4 352 47.4
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 1.4e-77 294.3 263 59.7
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 6.1e-76 288.9 324 46.3
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 1.8e-75 287.3 279 51.3
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 1.8e-72 277.3 485 37.3
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 2.6e-71 273.5 219 63.0
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 3.4e-71 273.1 252 52.4
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.9e-70 270.0 319 49.2
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 1.2e-68 264.6 216 62.0
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 2.7e-68 263.5 324 46.0
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 4.1e-64 249.6 421 35.4
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 4.5e-63 246.1 219 59.8
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 4.8e-57 226.1 367 37.3
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 1.4e-56 224.6 210 58.6
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 3.2e-53 213.4 158 65.2
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 4.1e-48 196.4 154 66.2
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 1.2e-47 194.9 126 69.0
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 3.0e-43 180.3 120 70.8
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 4.8e-41 172.9 317 34.1
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 7.0e-40 169.1 405 33.3
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 7.0e-40 169.1 174 52.3
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 1.5e-37 161.4 127 55.9
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 1.2e-34 151.8 108 69.4
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 3.4e-34 150.2 366 30.9
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 5.7e-34 149.4 122 56.6
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 1.3e-25 121.7 83 66.3
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 5.4e-24 116.3 105 52.4
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 5.6e-21 106.3 126 46.8
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 9.8e-18 95.5 71 59.2
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.7e-17 94.7 63 65.1
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 6.4e-09 66.2 180 31.7
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 1.4e-08 65.1 56 57.1


User provided reference genes

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