Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 1.1e-292 1009.2 482 100.0
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.6e-259 898.3 485 88.9
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 9.9e-259 896.3 490 87.1
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 1.1e-254 882.9 485 87.2
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.4e-236 822.0 540 76.1
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 5.0e-234 814.3 483 80.5
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 1.1e-230 803.1 488 78.1
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 3.7e-229 798.1 484 78.9
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 1.4e-228 796.2 484 78.3
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.5e-227 792.7 495 75.6
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 2.0e-227 792.3 484 77.1
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 4.5e-227 791.2 495 75.4
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 5.9e-227 790.8 484 77.5
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 7.7e-227 790.4 486 77.0
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 7.7e-227 790.4 491 76.6
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 1.7e-226 789.3 483 77.8
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 6.5e-226 787.3 487 77.2
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.1e-225 786.6 491 76.2
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 1.1e-225 786.6 486 77.0
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 3.2e-225 785.0 491 76.2
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.2e-225 784.6 483 76.6
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 7.2e-225 783.9 483 75.4
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 9.4e-225 783.5 483 76.8
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.6e-224 782.7 483 76.6
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.6e-224 782.7 483 76.4
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 1.4e-223 779.6 484 76.0
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.4e-223 779.6 483 76.4
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 1.8e-223 779.2 484 75.8
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.8e-223 779.2 483 76.6
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.8e-223 779.2 509 74.9
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 3.0e-223 778.5 483 76.0
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 5.2e-223 777.7 486 76.3
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.7e-223 777.3 483 76.2
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 1.5e-222 776.2 483 76.2
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.5e-222 776.2 486 76.1
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 2.6e-222 775.4 485 75.7
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 2.6e-222 775.4 486 75.5
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 2.6e-222 775.4 482 75.3
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 3.3e-222 775.0 484 75.8
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 9.7e-222 773.5 486 76.3
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 1.7e-221 772.7 484 76.4
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 3.7e-221 771.5 483 77.0
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 3.7e-221 771.5 482 76.6
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 4.8e-221 771.2 482 76.6
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 6.3e-221 770.8 483 75.8
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 8.2e-221 770.4 485 75.7
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.4e-220 768.8 485 76.3
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.4e-220 768.8 483 75.4
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 3.1e-220 768.5 483 75.4
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 5.3e-220 767.7 483 75.2
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.6e-219 766.1 483 74.7
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.0e-219 765.8 484 74.6
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.6e-219 765.4 486 75.1
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.6e-219 765.4 497 74.0
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 3.5e-219 765.0 483 74.9
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 7.7e-219 763.8 488 75.8
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 2.9e-218 761.9 522 71.5
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 2.9e-218 761.9 482 74.1
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 5.0e-218 761.1 490 74.1
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 6.5e-218 760.8 484 75.2
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 8.5e-218 760.4 485 75.5
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 4.2e-217 758.1 473 75.9
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 1.2e-216 756.5 482 73.9
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.2e-216 756.5 484 73.6
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 1.2e-216 756.5 486 74.3
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 2.7e-216 755.4 489 74.6
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.8e-215 752.7 457 77.2
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 6.7e-215 750.7 482 74.9
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 2.6e-214 748.8 572 65.0
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 5.7e-214 747.7 471 75.2
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 3.7e-213 745.0 482 73.2
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 1.1e-212 743.4 482 71.8
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 1.1e-212 743.4 482 71.6
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 3.1e-212 741.9 483 72.7
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 4.1e-212 741.5 483 71.8
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 5.3e-212 741.1 483 71.8
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 1.2e-211 740.0 488 73.0
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 3.5e-211 738.4 483 71.4
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 3.5e-211 738.4 483 71.4
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 1.7e-210 736.1 482 71.6
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.7e-210 736.1 484 74.4
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 2.2e-210 735.7 482 71.8
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 3.8e-210 734.9 484 72.1
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 5.0e-210 734.6 482 71.0
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 5.0e-210 734.6 486 73.0
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.5e-209 733.0 482 71.2
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 3.2e-209 731.9 487 73.1
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 9.4e-209 730.3 488 71.9
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 2.7e-208 728.8 482 70.1
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 2.7e-208 728.8 482 69.9
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 1.4e-207 726.5 578 62.6
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 3.0e-207 725.3 482 69.9
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 1.2e-206 723.4 486 70.0
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 5.7e-206 721.1 567 63.7
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 3.1e-204 715.3 506 66.8
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.5e-203 711.4 459 73.9
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 4.2e-201 704.9 571 63.0
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 3.4e-198 695.3 596 60.4
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 5.7e-198 694.5 410 79.8
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.1e-196 690.3 492 67.9
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 7.0e-196 687.6 482 69.9
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 5.6e-193 677.9 506 64.8
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 2.8e-192 675.6 415 76.6
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 6.4e-189 664.5 488 66.2
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 5.0e-186 654.8 451 71.0
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 9.2e-180 634.0 430 70.2
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 5.1e-178 628.2 410 71.0
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 4.9e-173 611.7 486 60.5
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 7.1e-172 607.8 497 59.8
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 7.1e-172 607.8 487 61.0
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.7e-171 605.9 374 77.3
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 5.1e-170 601.7 373 74.5
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 2.8e-168 595.9 373 74.0
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 2.3e-162 576.2 359 77.2
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 4.3e-161 572.0 342 77.5
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 3.1e-159 565.8 530 52.5
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 6.0e-155 551.6 327 81.3
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.9e-154 548.9 327 80.4
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 4.5e-150 535.4 326 77.6
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 1.7e-149 533.5 327 79.5
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.5e-142 510.4 324 74.7
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.5e-142 510.4 332 73.8
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 2.2e-141 506.5 356 68.8
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 8.2e-136 488.0 351 69.5
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 1.3e-128 464.2 326 69.9
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.9e-125 453.0 301 70.8
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 1.1e-103 381.3 448 44.6
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.8e-103 380.6 385 49.4
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.1e-95 352.8 222 72.5
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 2.2e-93 347.1 430 44.4
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 4.7e-91 339.3 231 68.8
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.4e-89 333.2 211 77.3
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.6e-75 286.6 187 75.9
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 8.3e-72 275.4 159 79.9
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 8.3e-72 275.4 159 79.9
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 3.0e-69 266.9 145 83.4
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.9e-69 266.5 159 78.6
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.5e-57 228.0 440 34.5
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.6e-46 191.4 106 84.0
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.3e-42 176.4 106 76.4
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.9e-40 170.6 94 86.2
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.8e-40 170.2 93 87.1
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 4.9e-40 169.9 142 56.3
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 4.8e-35 153.3 119 64.7
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 3.2e-31 140.6 91 68.1
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 2.5e-20 104.4 87 58.6
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 4.8e-19 100.1 67 65.7
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 6.9e-18 96.3 76 64.5
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 3.8e-16 90.5 69 68.1
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.1e-15 89.0 70 61.4
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.7e-14 84.3 65 53.8
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 4.1e-10 70.5 121 38.8
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 2.2e-08 64.7 138 35.5


User provided reference genes

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