Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 9.4e-66 253.4 134 100.0
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 2.6e-47 192.2 133 76.7
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 2.8e-46 188.7 113 85.8
AUR62019316 Chenopodium quinoa HOM05D006057 ORTHO05D007224 1.6e-44 183.0 129 77.5
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 1.6e-41 172.9 130 76.9
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 1.0e-35 153.7 128 64.1
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 5.6e-34 147.9 123 69.9
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 1.9e-26 122.9 126 55.6
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 3.3e-26 122.1 129 53.5
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 7.3e-26 120.9 113 56.6
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 9.5e-26 120.6 128 50.0
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 2.1e-25 119.4 94 62.8
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 1.8e-24 116.3 127 54.3
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 3.1e-24 115.5 131 55.7
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 3.1e-24 115.5 131 55.7
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 4.0e-24 115.2 124 52.4
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 6.8e-24 114.4 130 53.1
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 8.9e-24 114.0 133 50.4
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 1.2e-23 113.6 130 52.3
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 2.0e-23 112.8 124 56.5
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 2.6e-23 112.5 130 53.1
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 4.4e-23 111.7 97 59.8
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 4.4e-23 111.7 129 51.2
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 5.8e-23 111.3 129 52.7
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 5.8e-23 111.3 94 59.6
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 5.8e-23 111.3 124 55.6
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 7.5e-23 110.9 127 51.2
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 7.5e-23 110.9 105 55.2
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 9.8e-23 110.5 129 50.4
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 2.9e-22 109.0 125 51.2
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 2.9e-22 109.0 127 47.2
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 3.7e-22 108.6 130 50.8
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 4.9e-22 108.2 125 51.2
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 4.9e-22 108.2 127 48.8
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 4.9e-22 108.2 131 51.9
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 6.4e-22 107.8 118 52.5
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 6.4e-22 107.8 127 48.8
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 1.9e-21 106.3 129 49.6
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 2.4e-21 105.9 94 55.3
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 3.2e-21 105.5 128 48.4
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 3.2e-21 105.5 104 53.8
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 5.4e-21 104.8 95 53.7
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 5.4e-21 104.8 96 54.2
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 5.4e-21 104.8 127 48.0
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 5.4e-21 104.8 120 48.3
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 7.1e-21 104.4 94 51.1
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 9.2e-21 104.0 121 47.1
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 9.2e-21 104.0 130 50.0
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 9.2e-21 104.0 106 52.8
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 9.2e-21 104.0 116 49.1
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 1.2e-20 103.6 128 50.0
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.2e-20 103.6 129 49.6
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 1.2e-20 103.6 129 49.6
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 2.1e-20 102.8 120 50.8
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 2.1e-20 102.8 129 49.6
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 2.7e-20 102.4 133 46.6
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 2.7e-20 102.4 95 52.6
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 2.7e-20 102.4 94 54.3
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 2.7e-20 102.4 94 54.3
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 2.7e-20 102.4 127 48.8
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 2.7e-20 102.4 128 48.4
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 3.5e-20 102.1 104 51.9
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 3.5e-20 102.1 131 48.1
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 3.5e-20 102.1 105 57.1
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 6.0e-20 101.3 118 48.3
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 6.0e-20 101.3 120 46.7
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 6.0e-20 101.3 127 46.5
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 7.8e-20 100.9 129 48.8
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 7.8e-20 100.9 129 46.5
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 7.8e-20 100.9 129 48.8
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 1.0e-19 100.5 128 45.3
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 1.0e-19 100.5 118 46.6
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 1.3e-19 100.1 123 46.3
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 1.7e-19 99.8 122 50.8
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 2.3e-19 99.4 128 46.1
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 3.0e-19 99.0 127 49.6
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 3.9e-19 98.6 128 46.1
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 3.9e-19 98.6 128 46.1
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 3.9e-19 98.6 118 45.8
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 3.9e-19 98.6 118 45.8
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 3.9e-19 98.6 118 45.8
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 3.9e-19 98.6 128 47.7
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 3.9e-19 98.6 123 48.8
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 3.9e-19 98.6 133 45.1
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 5.1e-19 98.2 136 48.5
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 6.6e-19 97.8 130 49.2
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 8.6e-19 97.4 122 46.7
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 8.6e-19 97.4 128 48.4
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 1.1e-18 97.1 124 50.0
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 1.1e-18 97.1 126 46.8
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 1.5e-18 96.7 120 45.0
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 1.9e-18 96.3 119 50.4
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 1.9e-18 96.3 128 46.1
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 2.5e-18 95.9 95 51.6
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 3.3e-18 95.5 123 48.8
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 3.3e-18 95.5 99 51.5
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 4.3e-18 95.1 120 45.8
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 4.3e-18 95.1 127 44.9
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 4.3e-18 95.1 136 48.5
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 5.6e-18 94.7 127 44.9
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 5.6e-18 94.7 129 45.0
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 7.3e-18 94.4 80 56.2
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 7.3e-18 94.4 127 44.9
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 7.3e-18 94.4 127 44.9
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 7.3e-18 94.4 127 44.9
ATR0019G040 Amborella trichopoda HOM05D006057 ORTHO05D007224 3.6e-17 92.0 94 51.1
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 2.3e-16 89.4 122 45.1
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 6.8e-16 87.8 86 47.7
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 1.2e-15 87.0 84 52.4
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 1.2e-15 87.0 108 49.1
CDE12G0816 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 2.0e-15 86.3 67 62.7
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 9.9e-15 84.0 100 48.0
SMO361G0765 Selaginella moellendorffii HOM05D006057 ORTHO05D007224 2.9e-14 82.4 85 49.4
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 3.2e-13 79.0 142 40.1
Os03g0108700 Oryza sativa ssp. japonica HOM05D006057 ORTHO05D007224 7.8e-12 74.3 66 51.5
Gohir.D07G136950 Gossypium hirsutum HOM05D006057 ORTHO05D007224 2.3e-11 72.8 64 54.7
Gorai.001G149000 Gossypium raimondii HOM05D006057 ORTHO05D007224 5.1e-11 71.6 64 53.1
BcaNung05508 Brassica carinata HOM05D006057 ORTHO05D007224 1.5e-10 70.1 109 37.6
Zm00001eb000680 Zea mays HOM05D006057 ORTHO05D007224 1.9e-10 69.7 81 43.2
CBR_g39249 Chara braunii HOM05D006057 ORTHO05D007224 4.3e-10 68.6 102 41.2
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 7.3e-10 67.8 94 41.5
Mapoly0076s0084 Marchantia polymorpha HOM05D006057 ORTHO05D007224 4.0e-08 62.0 139 30.2
Pp3c25_8550 Physcomitrium patens HOM05D006057 ORTHO05D007224 6.8e-08 61.2 128 32.0
Ah.15g097910 Amaranthus hybridus HOM05D012832 ORTHO05D019522 1.5e-07 60.1 40 70.0
Ah.15g098350 Amaranthus hybridus HOM05D012832 ORTHO05D019522 1.5e-07 60.1 40 70.0


User provided reference genes

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