Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 9.6e-124 446.8 222 100.0
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.7e-96 356.3 223 78.9
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 3.2e-95 352.1 223 78.0
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.0e-80 303.9 222 68.5
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.3e-77 292.7 230 65.7
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.1e-76 290.4 224 66.5
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 5.7e-76 288.1 230 65.7
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.4e-74 283.5 224 64.3
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.1e-74 282.3 224 63.8
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 4.1e-74 282.0 221 67.0
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 4.1e-74 282.0 224 63.8
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.3e-74 281.6 224 63.8
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 7.0e-74 281.2 224 63.8
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.0e-73 279.6 230 63.5
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 2.0e-73 279.6 229 62.9
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.7e-73 279.3 224 62.5
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 4.5e-73 278.5 229 62.0
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 5.9e-73 278.1 229 62.9
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.0e-72 277.3 230 63.0
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.0e-72 277.3 225 64.9
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.7e-72 276.6 230 63.5
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.7e-72 276.6 230 63.9
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 2.2e-72 276.2 229 62.4
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 8.5e-72 274.2 224 63.4
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.1e-71 273.9 224 63.4
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.5e-71 273.5 228 62.3
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.9e-71 273.1 229 62.9
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.9e-71 273.1 226 61.5
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.9e-71 273.1 230 61.3
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.9e-71 273.1 230 63.0
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 2.5e-71 272.7 229 62.4
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.2e-71 272.3 225 61.3
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 3.2e-71 272.3 230 63.9
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.2e-71 271.2 230 60.4
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 7.2e-71 271.2 230 60.4
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 9.4e-71 270.8 228 61.4
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 2.7e-70 269.2 224 60.7
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 8.0e-70 267.7 223 60.5
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 8.0e-70 267.7 226 59.7
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.0e-69 267.3 225 63.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 6.8e-69 264.6 224 60.3
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 8.8e-69 264.2 225 59.6
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.5e-68 263.5 230 60.9
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.5e-68 263.5 232 59.5
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.0e-68 263.1 236 59.7
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.6e-68 262.7 230 59.1
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 3.4e-68 262.3 225 59.6
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.5e-68 261.2 230 59.6
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 9.8e-68 260.8 271 57.2
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 9.8e-68 260.8 230 60.9
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.3e-67 260.4 231 59.7
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.7e-67 260.0 224 59.4
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 2.2e-67 259.6 224 58.9
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 8.3e-67 257.7 223 59.2
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.8e-66 256.5 231 58.9
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.1e-66 255.4 232 58.6
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 7.0e-66 254.6 230 59.6
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 9.1e-66 254.2 228 59.6
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.6e-65 253.4 223 58.7
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.0e-65 253.1 217 58.5
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 1.0e-64 250.8 224 58.9
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.3e-64 250.4 222 56.3
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 1.7e-64 250.0 224 59.4
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 2.9e-64 249.2 216 57.4
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.9e-63 246.5 217 58.5
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.9e-63 246.5 223 57.0
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 3.2e-63 245.7 226 57.5
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.2e-63 245.7 235 55.3
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 7.2e-63 244.6 217 57.1
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.2e-62 243.8 230 55.2
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.7e-62 242.7 237 54.4
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 6.1e-62 241.5 223 56.5
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.4e-61 240.4 223 57.4
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.5e-60 236.9 227 57.3
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.6e-60 236.1 232 56.9
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 4.4e-60 235.3 227 55.1
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.4e-60 235.3 231 55.8
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 5.7e-60 235.0 230 55.7
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 5.7e-60 235.0 223 55.6
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 7.5e-60 234.6 224 54.0
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 9.8e-60 234.2 169 69.2
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.3e-59 233.8 223 54.3
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.7e-59 233.4 223 55.2
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.7e-59 233.4 223 55.2
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.7e-59 233.4 216 57.4
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.7e-59 233.4 225 55.1
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.8e-59 232.6 223 54.7
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.8e-59 232.6 232 56.0
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 4.9e-59 231.9 223 54.3
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 4.9e-59 231.9 233 53.6
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 6.3e-59 231.5 227 53.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 8.3e-59 231.1 223 55.6
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.1e-58 230.7 229 51.1
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.1e-58 230.7 232 55.6
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.8e-58 229.9 228 56.6
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.1e-58 229.2 216 55.6
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 5.4e-58 228.4 224 55.4
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 7.0e-58 228.0 215 55.3
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.2e-57 227.3 220 54.5
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 2.0e-57 226.5 228 53.9
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 2.0e-57 226.5 224 53.1
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 3.5e-57 225.7 221 53.4
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 3.5e-57 225.7 164 65.9
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 5.9e-57 224.9 224 55.8
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 5.9e-57 224.9 203 53.2
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 7.7e-57 224.6 220 54.1
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.0e-56 224.2 223 53.4
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.3e-56 223.8 200 58.0
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 2.3e-56 223.0 237 51.5
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.9e-56 222.6 246 49.6
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.8e-56 222.2 221 53.4
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 5.0e-56 221.9 230 54.3
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.0e-56 221.9 220 53.6
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 6.6e-56 221.5 175 61.7
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 6.6e-56 221.5 224 55.4
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 6.6e-56 221.5 224 55.4
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 6.6e-56 221.5 152 69.7
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.5e-55 219.5 216 52.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 3.3e-55 219.2 218 54.6
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 7.3e-55 218.0 231 51.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.8e-54 216.1 227 50.7
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 3.6e-54 215.7 234 50.9
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.6e-54 215.7 227 50.2
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 6.1e-54 214.9 235 50.6
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 6.1e-54 214.9 220 52.7
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 3.0e-53 212.6 245 48.6
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.0e-53 212.2 211 53.1
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 6.8e-53 211.5 170 60.0
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 6.8e-53 211.5 218 54.1
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.2e-52 210.7 140 69.3
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.7e-52 208.4 216 50.5
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 5.7e-52 208.4 256 48.8
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.7e-51 206.8 219 50.7
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 6.4e-51 204.9 185 58.4
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 8.3e-51 204.5 193 56.0
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.2e-50 202.6 226 50.4
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 5.4e-50 201.8 144 63.9
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.2e-49 200.7 128 66.4
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.0e-49 199.9 220 50.0
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 4.6e-49 198.7 226 48.7
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.0e-48 197.6 160 61.2
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 6.6e-48 194.9 138 61.6
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 7.3e-47 191.4 226 45.1
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.6e-46 190.3 192 55.7
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.1e-46 189.9 198 48.5
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 4.7e-46 188.7 201 48.8
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 6.2e-46 188.3 222 44.6
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 8.0e-46 188.0 222 45.0
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.3e-45 186.4 201 47.3
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 3.1e-45 186.0 160 59.4
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 3.1e-45 186.0 235 46.4
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.4e-44 182.2 222 42.8
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.8e-44 181.8 228 43.0
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 7.5e-44 181.4 156 55.8
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 2.2e-43 179.9 221 44.3
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.9e-43 179.5 203 44.3
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.4e-42 177.2 123 63.4
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.9e-42 176.8 222 41.0
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 4.1e-42 175.6 123 65.0
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.6e-41 173.7 129 58.9
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 2.0e-41 173.3 226 43.8
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.1e-38 163.3 123 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 2.8e-38 162.9 188 46.3
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.7e-38 162.2 224 44.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.1e-37 161.0 140 59.3
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 4.0e-37 159.1 127 54.3
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 4.9e-35 152.1 224 42.0
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 4.1e-34 149.1 118 54.2
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 7.1e-34 148.3 107 59.8
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.6e-33 147.1 214 43.9
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.5e-31 140.6 79 77.2
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 7.3e-31 138.3 228 41.2
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 7.3e-31 138.3 228 41.2
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 6.8e-29 131.7 223 39.9
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.2e-27 126.7 88 65.9
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 1.8e-21 107.1 85 58.8
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 6.0e-17 92.0 51 72.5
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 6.6e-16 88.6 52 71.2
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.2e-14 82.0 112 43.8


User provided reference genes

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