Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 2.7e-270 934.9 518 100.0
Ah.16g105500 Amaranthus hybridus HOM05D031501 ORTHO05D061637 5.3e-56 223.0 495 36.2
Ah.12g053940 Amaranthus hybridus HOM05D031501 ORTHO05D061985 3.6e-20 104.0 265 31.7
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.3e-10 70.9 37 97.3
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.3e-10 70.9 37 97.3
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 9.7e-10 69.3 37 91.9
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 9.7e-10 69.3 37 91.9
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 9.7e-10 69.3 37 91.9
Ah.08g217590 Amaranthus hybridus HOM05D031501 ORTHO05D060034 3.7e-09 67.4 55 61.8
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 8.2e-09 66.2 37 86.5
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 1.1e-08 65.9 37 86.5
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 1.8e-08 65.1 54 68.5
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 4.1e-08 63.9 37 86.5
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 4.1e-08 63.9 37 86.5
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 4.1e-08 63.9 37 86.5
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 4.1e-08 63.9 37 86.5
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 4.1e-08 63.9 37 86.5
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 4.1e-08 63.9 37 86.5
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 7.0e-08 63.2 37 81.1
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 7.0e-08 63.2 37 86.5
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 9.1e-08 62.8 37 83.8
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 9.1e-08 62.8 37 83.8
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 9.1e-08 62.8 37 83.8
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 1.2e-07 62.4 37 83.8
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 1.6e-07 62.0 37 83.8
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 1.6e-07 62.0 37 81.1
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 2.0e-07 61.6 37 81.1
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 2.0e-07 61.6 37 81.1
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 2.0e-07 61.6 37 78.4
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 2.0e-07 61.6 37 81.1
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.0e-07 61.6 37 81.1
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 2.6e-07 61.2 37 78.4
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 3.5e-07 60.8 37 81.1
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 3.5e-07 60.8 37 81.1
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 3.5e-07 60.8 37 75.7
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 4.5e-07 60.5 37 78.4
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 4.5e-07 60.5 37 78.4
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 4.5e-07 60.5 37 78.4
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 4.5e-07 60.5 37 78.4
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 4.5e-07 60.5 37 78.4
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 4.5e-07 60.5 37 78.4
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.5e-07 60.5 37 78.4
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 5.9e-07 60.1 37 78.4
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 5.9e-07 60.1 37 81.1
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 5.9e-07 60.1 37 78.4
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 5.9e-07 60.1 37 78.4
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 5.9e-07 60.1 37 78.4
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 5.9e-07 60.1 37 78.4
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 5.9e-07 60.1 37 81.1
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 5.9e-07 60.1 37 81.1
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 5.9e-07 60.1 37 78.4
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 5.9e-07 60.1 37 78.4
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 7.7e-07 59.7 37 78.4
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 7.7e-07 59.7 37 78.4
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 7.7e-07 59.7 37 75.7
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 7.7e-07 59.7 37 78.4
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 7.7e-07 59.7 37 78.4
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 7.7e-07 59.7 37 75.7
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 1.0e-06 59.3 37 75.7
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 1.0e-06 59.3 36 80.6
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.0e-06 59.3 37 75.7
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.0e-06 59.3 37 75.7
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.0e-06 59.3 37 75.7
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 1.0e-06 59.3 37 75.7
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 1.0e-06 59.3 37 78.4
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 1.0e-06 59.3 37 78.4
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 1.0e-06 59.3 37 75.7
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 1.0e-06 59.3 37 75.7
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 1.3e-06 58.9 37 73.0
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 1.3e-06 58.9 37 75.7
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 1.3e-06 58.9 37 73.0
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 1.3e-06 58.9 37 78.4
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 1.3e-06 58.9 37 75.7
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 1.3e-06 58.9 37 73.0
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 1.3e-06 58.9 37 73.0
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 1.3e-06 58.9 37 73.0
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 1.7e-06 58.5 37 75.7
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 1.7e-06 58.5 37 70.3
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 1.7e-06 58.5 37 78.4
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 2.2e-06 58.2 37 75.7
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 2.2e-06 58.2 37 73.0
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 2.9e-06 57.8 37 73.0
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 2.9e-06 57.8 37 75.7
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 2.9e-06 57.8 37 75.7
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 3.8e-06 57.4 37 78.4
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 3.8e-06 57.4 37 70.3
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 3.8e-06 57.4 37 73.0
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 3.8e-06 57.4 54 61.1
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 3.8e-06 57.4 37 70.3
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 73.0
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 5.0e-06 57.0 37 75.7
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 6.5e-06 56.6 37 75.7
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 8.5e-06 56.2 54 59.3
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 8.5e-06 56.2 37 73.0
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 8.5e-06 56.2 37 73.0
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 8.5e-06 56.2 37 73.0


User provided reference genes

Program Settings