Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g156700 Amaranthus hybridus HOM05D007370 ORTHO05D009394 3.0e-218 761.5 381 100.0
EL10Ac3g05507 Beta vulgaris HOM05D007370 ORTHO05D009394 1.4e-159 566.6 409 72.1
AUR62039281 Chenopodium quinoa HOM05D007370 ORTHO05D009394 2.3e-133 479.6 409 63.3
Dinv15168 Davidia involucrata HOM05D007370 ORTHO05D009394 2.3e-125 453.0 411 57.7
Haze_01298 Corylus avellana HOM05D007370 ORTHO05D009394 6.9e-122 441.4 399 57.1
Cc03_g00820 Coffea canephora HOM05D007370 ORTHO05D009394 9.0e-122 441.0 412 56.6
Atru.chr4.3000 Acer truncatum HOM05D007370 ORTHO05D009394 2.0e-121 439.9 394 59.1
Sc13g0006460 Simmondsia chinensis HOM05D007370 ORTHO05D009394 2.6e-121 439.5 420 56.7
Rhsim02G0003800 Rhododendron simsii HOM05D007370 ORTHO05D009394 4.5e-121 438.7 418 55.3
AUR62016207 Chenopodium quinoa HOM05D007370 ORTHO05D009394 1.3e-120 437.2 393 61.6
DCAR_002511 Daucus carota HOM05D007370 ORTHO05D009394 2.9e-120 436.0 408 55.1
Duzib052G0732 Durio zibethinus HOM05D007370 ORTHO05D009394 3.8e-120 435.6 420 55.0
TWI09G1560 Tripterygium wilfordii HOM05D007370 ORTHO05D009394 9.4e-119 431.0 374 58.8
CiPaw.01G138600 Carya illinoinensis HOM05D007370 ORTHO05D009394 2.1e-118 429.9 423 53.4
Thecc.04G300700 Theobroma cacao HOM05D007370 ORTHO05D009394 2.7e-118 429.5 420 55.5
Gohir.A01G034400 Gossypium hirsutum HOM05D007370 ORTHO05D009394 1.4e-117 427.2 426 53.1
Lj6g0027049 Lotus japonicus HOM05D007370 ORTHO05D009394 6.7e-117 424.9 422 54.3
TAR362G0601 Trochodendron aralioides HOM05D007370 ORTHO05D009394 6.7e-117 424.9 407 54.3
COL.COLO4_34615 Corchorus olitorius HOM05D007370 ORTHO05D009394 1.5e-116 423.7 420 54.3
Prupe.1G117500 Prunus persica HOM05D007370 ORTHO05D009394 1.5e-116 423.7 423 52.0
Nn6g33643 Nelumbo nucifera HOM05D007370 ORTHO05D009394 2.5e-116 422.9 417 54.7
Manes.15G004200 Manihot esculenta HOM05D007370 ORTHO05D009394 1.3e-115 420.6 429 52.4
Potri.010G145700 Populus trichocarpa HOM05D007370 ORTHO05D009394 2.8e-115 419.5 397 54.2
Sed0008389 Sechium edule HOM05D007370 ORTHO05D009394 2.8e-115 419.5 421 54.2
Gorai.002G030100 Gossypium raimondii HOM05D007370 ORTHO05D009394 6.3e-115 418.3 448 50.4
Glyma.09G035700 Glycine max HOM05D007370 ORTHO05D009394 8.2e-115 417.9 390 56.2
TPR.G27253 Trifolium pratense HOM05D007370 ORTHO05D009394 8.2e-115 417.9 427 54.1
MBI18_g37561_MAGBIO Magnolia biondii HOM05D007370 ORTHO05D009394 1.8e-114 416.8 430 50.9
Medtr2g034140 Medicago truncatula HOM05D007370 ORTHO05D009394 2.0e-113 413.3 427 53.6
PGR142G3192 Punica granatum HOM05D007370 ORTHO05D009394 2.0e-113 413.3 413 53.0
Psat1g161680 Pisum sativum HOM05D007370 ORTHO05D009394 5.9e-113 411.8 409 55.7
CsaV3_6G022350 Cucumis sativus L. HOM05D007370 ORTHO05D009394 7.7e-113 411.4 422 54.0
Eucgr.A00294 Eucalyptus grandis HOM05D007370 ORTHO05D009394 1.7e-112 410.2 425 53.6
Phvul.006G118000 Phaseolus vulgaris HOM05D007370 ORTHO05D009394 2.9e-112 409.5 408 52.7
FvH4_4g19730 Fragaria vesca HOM05D007370 ORTHO05D009394 1.4e-111 407.1 422 50.2
RcHm_v2.0_Chr4g0425231 Rosa chinensis HOM05D007370 ORTHO05D009394 2.5e-111 406.4 420 50.5
VMungo0540G1057 Vigna mungo HOM05D007370 ORTHO05D009394 4.2e-111 405.6 439 51.3
FAN07G1244 Fragaria x ananassa HOM05D007370 ORTHO05D009394 9.4e-111 404.4 425 49.9
arahy.Tifrunner.gnm1.ann1.HMTG6S Arachis hypogaea HOM05D007370 ORTHO05D009394 1.2e-110 404.1 436 51.1
arahy.Tifrunner.gnm1.ann1.VHF2FI Arachis hypogaea HOM05D007370 ORTHO05D009394 1.2e-110 404.1 433 51.3
Migut.G00060 Erythranthe guttata HOM05D007370 ORTHO05D009394 7.9e-110 401.4 412 52.4
Lalb_Chr20g0120861 Lupinus albus HOM05D007370 ORTHO05D009394 1.4e-109 400.6 392 56.4
MD16G1154200 Malus domestica HOM05D007370 ORTHO05D009394 2.3e-109 399.8 420 52.9
ECA248G2723 Erigeron canadensis HOM05D007370 ORTHO05D009394 5.1e-109 398.7 410 52.9
FAN12G3716 Fragaria x ananassa HOM05D007370 ORTHO05D009394 1.1e-108 397.5 379 54.4
QL06p012270 Quercus lobata HOM05D007370 ORTHO05D009394 1.7e-107 393.7 357 56.0
Sopen12g033950 Solanum pennellii HOM05D007370 ORTHO05D009394 8.2e-107 391.3 411 51.3
PGSC0003DMG400004697 Solanum tuberosum HOM05D007370 ORTHO05D009394 3.1e-106 389.4 415 52.5
ATR0693G166 Amborella trichopoda HOM05D007370 ORTHO05D009394 5.3e-106 388.7 386 53.1
CAN.G484.61 Capsicum annuum HOM05D007370 ORTHO05D009394 5.3e-106 388.7 409 52.3
HanXRQChr01g0030981 Helianthus annuus HOM05D007370 ORTHO05D009394 1.2e-105 387.5 394 52.8
Lj6A691G74 Lonicera japonica HOM05D007370 ORTHO05D009394 5.9e-105 385.2 429 50.1
Peaxi162Scf00120g00023 Petunia axillaris HOM05D007370 ORTHO05D009394 1.9e-103 380.2 376 54.3
SalBow8G4515 Salvia bowleyana HOM05D007370 ORTHO05D009394 2.5e-103 379.8 374 52.9
Solyc12g099270.2 Solanum lycopersicum HOM05D007370 ORTHO05D009394 1.2e-102 377.5 412 51.0
CDE08G1199 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 2.7e-102 376.3 407 49.6
Nitab4.5_0002294g0020 Nicotiana tabacum HOM05D007370 ORTHO05D009394 8.0e-102 374.8 407 51.4
Nitab4.5_0002150g0160 Nicotiana tabacum HOM05D007370 ORTHO05D009394 3.0e-101 372.9 405 51.9
unitig_37.g12412 Utricularia gibba HOM05D007370 ORTHO05D009394 6.7e-101 371.7 389 51.7
CSS0048431 Camellia sinensis var. sinensis HOM05D007370 ORTHO05D009394 1.3e-99 367.5 275 64.4
vmacro15182 Vaccinium macrocarpon HOM05D007370 ORTHO05D009394 2.8e-99 366.3 282 63.1
Os05g0157300 Oryza sativa ssp. japonica HOM05D007370 ORTHO05D009394 1.6e-97 360.5 373 50.9
Hund11933 Selenicereus undatus HOM05D007370 ORTHO05D009394 1.6e-97 360.5 441 50.1
Zm00001eb356360 Zea mays HOM05D007370 ORTHO05D009394 2.0e-97 360.1 373 50.7
Gohir.D01G023538 Gossypium hirsutum HOM05D007370 ORTHO05D009394 3.2e-95 352.8 284 60.9
MELO3C021271.2 Cucumis melo HOM05D007370 ORTHO05D009394 1.6e-94 350.5 288 62.2
Sabra10G0112300 Salix brachista HOM05D007370 ORTHO05D009394 6.1e-94 348.6 287 60.3
arahy.Tifrunner.gnm1.ann1.DXY8A4 Arachis hypogaea HOM05D007370 ORTHO05D009394 1.0e-93 347.8 457 45.5
arahy.Tifrunner.gnm1.ann1.CV4FMG Arachis hypogaea HOM05D007370 ORTHO05D009394 2.0e-92 343.6 319 55.2
Cpa.g.sc9.57 Carica papaya HOM05D007370 ORTHO05D009394 7.5e-92 341.7 284 60.2
SEGI_11896 Sequoiadendron giganteum HOM05D007370 ORTHO05D009394 3.1e-90 336.3 409 45.5
Lsat_1_v5_gn_1_41060 Lactuca sativa HOM05D007370 ORTHO05D009394 5.9e-89 332.0 336 54.5
Hund11975 Selenicereus undatus HOM05D007370 ORTHO05D009394 1.8e-74 283.9 219 65.8
ClCG06G004600 Citrullus lanatus HOM05D007370 ORTHO05D009394 4.1e-74 282.7 411 44.0
Pp3c14_3570 Physcomitrium patens HOM05D007370 ORTHO05D009394 1.1e-71 274.6 430 40.0
HPP92_027782 Vanilla planifolia HOM05D007370 ORTHO05D009394 2.5e-71 273.5 233 57.5
Peaxi162Scf01160g00001 Petunia axillaris HOM05D007370 ORTHO05D009394 3.5e-65 253.1 373 42.4
CBR_g50285 Chara braunii HOM05D007370 ORTHO05D009394 1.7e-64 250.8 411 38.0
Mapoly0007s0102 Marchantia polymorpha HOM05D007370 ORTHO05D009394 3.9e-64 249.6 297 43.4
SGA_v2.0_scaffold104G30077 Striga asiatica HOM05D007370 ORTHO05D009394 1.8e-61 240.7 257 49.4
AagrBONN_evm.TU.Sc2ySwM_228.2788 Anthoceros agrestis HOM05D007370 ORTHO05D009394 4.1e-58 229.6 364 38.5
SMO145G0205 Selaginella moellendorffii HOM05D007370 ORTHO05D009394 6.0e-57 225.7 316 41.8
Mapoly0007s0137 Marchantia polymorpha HOM05D007370 ORTHO05D009394 1.1e-50 204.9 313 40.3
GSVIVG01034991001 Vitis vinifera HOM05D007370 ORTHO05D009394 2.8e-46 190.3 155 55.5
QL06p020122 Quercus lobata HOM05D007370 ORTHO05D009394 4.2e-42 176.4 141 59.6
Eucgr.A00046 Eucalyptus grandis HOM05D007370 ORTHO05D009394 7.1e-42 175.6 198 47.5
Ca_00981_v3 Cicer arietinum L. HOM05D007370 ORTHO05D009394 1.1e-34 151.8 131 64.9
Glyma.15G140501 Glycine max HOM05D007370 ORTHO05D009394 3.5e-33 146.7 170 47.1
Oeu001173.1 Olea europaea HOM05D007370 ORTHO05D009394 8.4e-27 125.6 123 52.0
Ca_03237_v3 Cicer arietinum L. HOM05D007370 ORTHO05D009394 2.1e-25 120.9 207 39.1
Mapoly0007s0289 Marchantia polymorpha HOM05D007370 ORTHO05D009394 2.9e-19 100.5 125 43.2
Mapoly0252s0002 Marchantia polymorpha HOM05D007370 ORTHO05D009394 2.9e-19 100.5 125 43.2
vmacro15183 Vaccinium macrocarpon HOM05D007370 ORTHO05D009394 8.4e-19 99.0 93 59.1
MD13G1153900 Malus domestica HOM05D007370 ORTHO05D009394 4.6e-17 93.2 93 55.9
CDE02G2864 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 4.3e-15 86.7 86 52.3
Glyma.18G184250 Glycine max HOM05D007370 ORTHO05D009394 4.3e-15 86.7 65 60.0
arahy.Tifrunner.gnm1.ann1.Y96K7L Arachis hypogaea HOM05D007370 ORTHO05D009394 2.4e-13 80.9 109 38.5
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 3.1e-13 80.5 63 68.3
CDE02G4406 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 1.0e-11 75.5 61 60.7
HPP92_027781 Vanilla planifolia HOM05D007370 ORTHO05D009394 1.8e-08 64.7 36 77.8
FAN12G2956 Fragaria x ananassa HOM05D007370 ORTHO05D009394 2.3e-08 64.3 59 59.3
SEGI_23244 Sequoiadendron giganteum HOM05D007370 ORTHO05D009394 1.1e-07 62.0 58 53.4


User provided reference genes

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