Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g155120 Amaranthus hybridus HOM05D006893 ORTHO05D008495 5.0e-135 485.0 350 100.0
EL10Ac3g04934 Beta vulgaris HOM05D006893 ORTHO05D008495 3.2e-41 173.3 370 57.8
Potri.010G005300 Populus trichocarpa HOM05D006893 ORTHO05D008495 1.1e-38 164.9 357 39.8
Duzib212G0998 Durio zibethinus HOM05D006893 ORTHO05D008495 5.7e-38 162.5 363 40.5
AUR62035073 Chenopodium quinoa HOM05D006893 ORTHO05D008495 3.1e-36 156.8 413 50.6
CiPaw.01G144100 Carya illinoinensis HOM05D006893 ORTHO05D008495 4.5e-35 152.9 344 39.0
Lj6C683T11 Lonicera japonica HOM05D006893 ORTHO05D008495 1.3e-34 151.4 317 39.7
Thecc.04G291400 Theobroma cacao HOM05D006893 ORTHO05D008495 2.5e-33 147.1 360 38.3
Sabra10G0004500 Salix brachista HOM05D006893 ORTHO05D008495 4.2e-33 146.4 349 37.0
Prupe.1G129100 Prunus persica HOM05D006893 ORTHO05D008495 5.5e-33 146.0 343 39.1
Manes.15G008800 Manihot esculenta HOM05D006893 ORTHO05D008495 1.6e-32 144.4 347 47.6
Dinv44337 Davidia involucrata HOM05D006893 ORTHO05D008495 2.7e-32 143.7 346 39.6
MD16G1161600 Malus domestica HOM05D006893 ORTHO05D008495 1.4e-31 141.4 334 50.6
PGR004G1654 Punica granatum HOM05D006893 ORTHO05D008495 1.8e-31 141.0 347 43.2
TWI09G0148 Tripterygium wilfordii HOM05D006893 ORTHO05D008495 1.8e-31 141.0 357 37.0
Duzib052G0831 Durio zibethinus HOM05D006893 ORTHO05D008495 2.3e-31 140.6 346 37.9
Ciclev10005318m.g Citrus clementina HOM05D006893 ORTHO05D008495 3.0e-31 140.2 332 50.3
SGA_v2.0_scaffold146G36231 Striga asiatica HOM05D006893 ORTHO05D008495 3.0e-31 140.2 323 35.0
Hma1.2p1_1352F.1_g277580 Hydrangea macrophylla HOM05D006893 ORTHO05D008495 1.5e-30 137.9 371 39.9
Cc03_g01320 Coffea canephora HOM05D006893 ORTHO05D008495 2.0e-30 137.5 347 39.8
TWI53G1979 Tripterygium wilfordii HOM05D006893 ORTHO05D008495 2.0e-30 137.5 344 34.6
AUR62016159 Chenopodium quinoa HOM05D006893 ORTHO05D008495 2.2e-29 134.0 408 41.9
CiPaw.02G078700 Carya illinoinensis HOM05D006893 ORTHO05D008495 4.8e-29 132.9 348 38.8
Gohir.D02G056400 Gossypium hirsutum HOM05D006893 ORTHO05D008495 6.3e-29 132.5 339 38.9
Gohir.A02G051500 Gossypium hirsutum HOM05D006893 ORTHO05D008495 1.4e-28 131.3 339 38.1
Cpa.g.sc9.112 Carica papaya HOM05D006893 ORTHO05D008495 2.4e-28 130.6 334 37.4
TAR636G3297 Trochodendron aralioides HOM05D006893 ORTHO05D008495 2.4e-28 130.6 319 42.0
Gorai.005G062300 Gossypium raimondii HOM05D006893 ORTHO05D008495 2.0e-27 127.5 315 39.7
Dinv29707 Davidia involucrata HOM05D006893 ORTHO05D008495 2.7e-27 127.1 355 40.0
Hund03092 Selenicereus undatus HOM05D006893 ORTHO05D008495 4.5e-27 126.3 394 50.3
Atru.chr4.2934 Acer truncatum HOM05D006893 ORTHO05D008495 5.9e-27 125.9 104 60.6
Aqoxy2G02860 Aquilegia oxysepala HOM05D006893 ORTHO05D008495 7.7e-27 125.6 344 34.6
MSTRG.21783 Avicennia marina HOM05D006893 ORTHO05D008495 7.7e-27 125.6 315 41.9
Nn3g21581 Nelumbo nucifera HOM05D006893 ORTHO05D008495 7.7e-27 125.6 352 33.8
Actinidia40309 Actinidia chinensis HOM05D006893 ORTHO05D008495 6.5e-26 122.5 357 42.0
TAR362G0125 Trochodendron aralioides HOM05D006893 ORTHO05D008495 7.2e-25 119.0 354 33.3
RcHm_v2.0_Chr4g0423841 Rosa chinensis HOM05D006893 ORTHO05D008495 2.1e-24 117.5 94 60.6
FvH4_4g18950 Fragaria vesca HOM05D006893 ORTHO05D008495 4.7e-24 116.3 357 38.7
Eucgr.H03971 Eucalyptus grandis HOM05D006893 ORTHO05D008495 1.4e-23 114.8 326 40.8
Haze_01136 Corylus avellana HOM05D006893 ORTHO05D008495 2.3e-23 114.0 354 33.9
COL.COLO4_34693 Corchorus olitorius HOM05D006893 ORTHO05D008495 4.0e-23 113.2 109 56.0
Migut.N00064 Erythranthe guttata HOM05D006893 ORTHO05D008495 4.0e-23 113.2 327 38.5
FAN07G1462 Fragaria x ananassa HOM05D006893 ORTHO05D008495 6.8e-23 112.5 349 43.8
Cfa015452 Carpinus fangiana HOM05D006893 ORTHO05D008495 1.2e-22 111.7 353 33.4
QL06p010948 Quercus lobata HOM05D006893 ORTHO05D008495 2.0e-22 110.9 344 35.8
CsaV3_3G014950 Cucumis sativus L. HOM05D006893 ORTHO05D008495 5.7e-22 109.4 104 57.7
DCAR_023309 Daucus carota HOM05D006893 ORTHO05D008495 5.7e-22 109.4 317 36.0
MELO3C006691.2 Cucumis melo HOM05D006893 ORTHO05D008495 9.8e-22 108.6 98 59.2
TAR365G1113 Trochodendron aralioides HOM05D006893 ORTHO05D008495 1.7e-21 107.8 339 37.5
Duzib151G1176 Durio zibethinus HOM05D006893 ORTHO05D008495 2.2e-21 107.5 295 40.0
Hma1.2p1_0013F.1_g009095 Hydrangea macrophylla HOM05D006893 ORTHO05D008495 4.8e-21 106.3 203 41.9
FAN12G3246 Fragaria x ananassa HOM05D006893 ORTHO05D008495 1.1e-20 105.1 353 37.4
FAN12G4353 Fragaria x ananassa HOM05D006893 ORTHO05D008495 1.1e-20 105.1 353 37.4
Nn4g25705 Nelumbo nucifera HOM05D006893 ORTHO05D008495 1.1e-20 105.1 342 33.3
PSO407G0319 Papaver somniferum HOM05D006893 ORTHO05D008495 1.8e-20 104.4 346 34.7
ClCG05G006320 Citrullus lanatus HOM05D006893 ORTHO05D008495 2.4e-20 104.0 104 55.8
MBI18_g04566_MAGBIO Magnolia biondii HOM05D006893 ORTHO05D008495 2.4e-20 104.0 235 41.3
Aqoxy22s005 Aquilegia oxysepala HOM05D006893 ORTHO05D008495 3.1e-20 103.6 105 52.4
TAR371G1102 Trochodendron aralioides HOM05D006893 ORTHO05D008495 4.1e-20 103.2 302 40.4
CANSAT78G1743 Cannabis sativa HOM05D006893 ORTHO05D008495 7.0e-20 102.4 372 37.1
MBI19_g05148_MAGBIO Magnolia biondii HOM05D006893 ORTHO05D008495 7.0e-20 102.4 93 54.8
Sed0012680 Sechium edule HOM05D006893 ORTHO05D008495 1.6e-19 101.3 108 52.8
HanXRQChr03g0084941 Helianthus annuus HOM05D006893 ORTHO05D008495 2.7e-19 100.5 323 39.0
Oeu033816.1 Olea europaea HOM05D006893 ORTHO05D008495 2.7e-19 100.5 231 34.2
Peaxi162Scf00065g01019 Petunia axillaris HOM05D006893 ORTHO05D008495 1.7e-18 97.8 209 34.0
Rhsim04G0228400 Rhododendron simsii HOM05D006893 ORTHO05D008495 2.3e-18 97.4 235 45.1
Gorai.011G194300 Gossypium raimondii HOM05D006893 ORTHO05D008495 3.8e-18 96.7 103 54.4
Nitab4.5_0002755g0070 Nicotiana tabacum HOM05D006893 ORTHO05D008495 1.1e-17 95.1 374 40.9
MD13G1161800 Malus domestica HOM05D006893 ORTHO05D008495 1.5e-17 94.7 364 35.7
Gohir.D10G173750 Gossypium hirsutum HOM05D006893 ORTHO05D008495 1.9e-17 94.4 103 54.4
arahy.Tifrunner.gnm1.ann1.IR9GWY Arachis hypogaea HOM05D006893 ORTHO05D008495 2.5e-17 94.0 313 32.9
PSO170G0180 Papaver somniferum HOM05D006893 ORTHO05D008495 2.5e-17 94.0 350 35.4
Glyma.07G244000 Glycine max HOM05D006893 ORTHO05D008495 3.3e-17 93.6 346 29.8
THA.LOC104823747 Tarenaya hassleriana HOM05D006893 ORTHO05D008495 3.3e-17 93.6 234 41.9
GSVIVG01035078001 Vitis vinifera HOM05D006893 ORTHO05D008495 4.2e-17 93.2 218 42.2
ECA246G0139 Erigeron canadensis HOM05D006893 ORTHO05D008495 7.2e-17 92.4 238 39.9
PSO170G5603 Papaver somniferum HOM05D006893 ORTHO05D008495 1.2e-16 91.7 240 35.8
Lsat_1_v5_gn_3_21921 Lactuca sativa HOM05D006893 ORTHO05D008495 1.6e-16 91.3 311 36.0
PSO357G0434 Papaver somniferum HOM05D006893 ORTHO05D008495 1.6e-16 91.3 243 37.0
Solyc01g065690.3 Solanum lycopersicum HOM05D006893 ORTHO05D008495 4.7e-16 89.7 425 38.8
Oeu016262.1 Olea europaea HOM05D006893 ORTHO05D008495 8.0e-16 89.0 347 32.9
Lj4g0016264 Lotus japonicus HOM05D006893 ORTHO05D008495 1.0e-15 88.6 368 25.8
Glyma.17G029900 Glycine max HOM05D006893 ORTHO05D008495 1.8e-15 87.8 89 49.4
Lj4g0003398 Lotus japonicus HOM05D006893 ORTHO05D008495 1.8e-15 87.8 364 25.8
MSTRG.3881 Avicennia marina HOM05D006893 ORTHO05D008495 3.0e-15 87.0 104 46.2
Lalb_Chr07g0182231 Lupinus albus HOM05D006893 ORTHO05D008495 3.0e-15 87.0 341 27.3
Ca_21468_v3 Cicer arietinum L. HOM05D006893 ORTHO05D008495 5.2e-15 86.3 351 26.8
Ca_21502_v3 Cicer arietinum L. HOM05D006893 ORTHO05D008495 5.2e-15 86.3 351 26.8
PGR031G0547 Punica granatum HOM05D006893 ORTHO05D008495 5.2e-15 86.3 103 46.6
ECA240G3740 Erigeron canadensis HOM05D006893 ORTHO05D008495 8.9e-15 85.5 295 32.5
Gohir.A10G167700 Gossypium hirsutum HOM05D006893 ORTHO05D008495 4.4e-14 83.2 330 28.5
VMungo1215G1370 Vigna mungo HOM05D000322 ORTHO05D000186 5.7e-14 82.8 338 30.8
Phvul.003G108900 Phaseolus vulgaris HOM05D006893 ORTHO05D008495 9.8e-14 82.0 351 29.9
arahy.Tifrunner.gnm1.ann1.A55GHP Arachis hypogaea HOM05D006893 ORTHO05D008495 1.3e-13 81.6 86 47.7
vmacro08097 Vaccinium macrocarpon HOM05D006893 ORTHO05D008495 1.3e-13 81.6 382 34.3
Nitab4.5_0000306g0330 Nicotiana tabacum HOM05D006893 ORTHO05D008495 3.7e-13 80.1 366 41.5
Manes.03G200250 Manihot esculenta HOM05D006893 ORTHO05D008495 1.4e-12 78.2 322 34.5
Oeu028327.1 Olea europaea HOM05D006893 ORTHO05D008495 1.8e-12 77.8 221 31.7
Os01g0309800 Oryza sativa ssp. japonica HOM05D006893 ORTHO05D008495 4.1e-12 76.6 104 41.3
PGSC0003DMG400006243 Solanum tuberosum HOM05D006893 ORTHO05D008495 5.4e-12 76.3 424 36.6
CDE11G0221 Ceratophyllum demersum HOM05D006893 ORTHO05D008495 1.2e-11 75.1 87 46.0
Zm00001eb130400 Zea mays HOM05D006893 ORTHO05D008495 7.8e-11 72.4 77 45.5
TPR.G4842 Trifolium pratense HOM05D006893 ORTHO05D008495 1.3e-10 71.6 342 26.0
Medtr4g120750 Medicago truncatula HOM05D006893 ORTHO05D008495 3.9e-10 70.1 342 26.0
Psat4g024920 Pisum sativum HOM05D006893 ORTHO05D008495 7.3e-09 65.9 346 26.0
Lalb_Chr18g0059061 Lupinus albus HOM05D006893 ORTHO05D008495 2.8e-08 63.9 34 76.5
unitig_748.g8718 Utricularia gibba HOM05D006893 ORTHO05D008495 6.1e-08 62.8 136 32.4
arahy.Tifrunner.gnm1.ann1.8F5MWG Arachis hypogaea HOM05D006893 ORTHO05D008495 8.0e-08 62.4 301 31.9
arahy.Tifrunner.gnm1.ann1.RE2MDR Arachis hypogaea HOM05D006893 ORTHO05D008495 4.0e-07 60.1 60 51.7
CDE05G0963 Ceratophyllum demersum HOM05D006893 ORTHO05D008495 8.9e-07 58.9 242 28.1
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 1.2e-06 58.5 91 34.1
ATR0693G301 Amborella trichopoda HOM05D006893 ORTHO05D008495 4.4e-06 56.6 38 57.9
SalBow2G1430 Salvia bowleyana HOM05D006893 ORTHO05D008495 9.8e-06 55.5 277 38.3


User provided reference genes

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