Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 4.0e-122 441.4 221 100.0
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 1.3e-56 223.8 269 53.2
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 4.0e-45 185.7 238 50.4
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 8.6e-40 167.9 284 42.6
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 3.4e-36 156.0 255 42.4
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.3e-35 154.1 251 42.2
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 1.1e-31 141.0 292 35.6
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 7.3e-31 138.3 307 36.8
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.2e-28 131.0 295 33.9
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.7e-27 125.9 309 34.3
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 3.7e-27 125.9 300 34.3
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 4.9e-27 125.6 295 34.6
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 4.9e-27 125.6 299 34.4
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 4.9e-27 125.6 299 34.4
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 6.4e-27 125.2 302 34.8
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 6.4e-27 125.2 304 34.5
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 6.4e-27 125.2 289 35.3
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 1.1e-26 124.4 295 34.9
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.2e-26 122.9 270 33.0
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 5.4e-26 122.1 290 34.5
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 5.4e-26 122.1 301 34.2
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 7.0e-26 121.7 290 32.8
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 1.2e-25 120.9 290 33.4
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 3.5e-25 119.4 290 31.7
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 3.5e-25 119.4 296 37.5
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 7.8e-25 118.2 300 33.0
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.3e-24 117.5 309 32.4
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.3e-24 117.5 291 35.1
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 5.0e-24 115.5 290 33.4
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 6.6e-24 115.2 288 35.8
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.1e-23 114.4 277 31.4
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 1.5e-23 114.0 299 30.8
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 2.5e-23 113.2 230 35.7
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 2.5e-23 113.2 293 31.7
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 5.6e-23 112.1 266 33.5
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.2e-22 110.9 298 31.2
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.6e-22 110.5 279 34.8
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.8e-22 109.8 297 30.6
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 4.7e-22 109.0 291 33.0
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 4.7e-22 109.0 285 30.9
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 6.2e-22 108.6 282 35.1
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 2.3e-21 106.7 190 38.9
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 2.3e-21 106.7 268 32.8
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 2.3e-21 106.7 266 31.2
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 3.1e-21 106.3 267 32.6
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 6.8e-21 105.1 279 33.3
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 6.8e-21 105.1 281 34.2
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 8.9e-21 104.8 273 33.0
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.5e-20 104.0 280 31.1
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 2.6e-20 103.2 289 31.8
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 3.4e-20 102.8 269 34.2
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 3.4e-20 102.8 297 31.6
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 4.4e-20 102.4 272 33.1
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 4.4e-20 102.4 289 31.5
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 5.8e-20 102.1 266 30.8
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 9.8e-20 101.3 290 30.0
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 9.8e-20 101.3 283 28.6
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 1.7e-19 100.5 298 31.9
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 2.9e-19 99.8 254 30.7
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.9e-19 99.8 319 30.4
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 4.9e-19 99.0 276 31.2
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 4.9e-19 99.0 281 31.3
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 6.4e-19 98.6 299 30.4
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 8.3e-19 98.2 270 33.0
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.1e-18 97.8 207 38.6
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.9e-18 97.1 311 29.9
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 1.9e-18 97.1 296 31.1
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 3.2e-18 96.3 246 32.1
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 3.2e-18 96.3 307 30.9
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 3.2e-18 96.3 282 31.2
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 5.4e-18 95.5 296 27.4
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 7.1e-18 95.1 207 37.7
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.6e-17 94.0 301 30.6
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.6e-17 94.0 287 30.3
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 2.7e-17 93.2 292 30.8
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.5e-17 92.8 277 31.8
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 4.6e-17 92.4 281 28.5
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 4.6e-17 92.4 296 29.7
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.0e-17 92.0 284 32.0
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 7.8e-17 91.7 190 39.5
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 1.0e-16 91.3 229 31.4
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.3e-16 90.9 310 28.4
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 2.3e-16 90.1 298 28.5
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.3e-16 90.1 179 36.9
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 3.0e-16 89.7 247 28.3
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 3.0e-16 89.7 309 28.8
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 5.1e-16 89.0 285 29.8
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 5.1e-16 89.0 254 32.3
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 8.6e-16 88.2 286 31.5
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.1e-15 87.8 257 31.1
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 2.5e-15 86.7 300 29.3
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.5e-15 86.7 288 29.5
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 5.6e-15 85.5 280 28.6
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 7.3e-15 85.1 218 33.9
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 9.5e-15 84.7 306 29.4
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.6e-14 84.0 256 27.3
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.6e-14 84.0 289 28.7
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.6e-14 84.0 254 32.7
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 2.1e-14 83.6 270 31.1
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 2.1e-14 83.6 270 31.1
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 2.1e-14 83.6 270 31.1
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 2.1e-14 83.6 270 31.1
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 2.8e-14 83.2 292 28.4
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 2.8e-14 83.2 239 31.4
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 3.6e-14 82.8 280 28.6
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 3.6e-14 82.8 287 31.0
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 4.7e-14 82.4 271 28.4
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 4.7e-14 82.4 283 28.3
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 4.7e-14 82.4 275 29.1
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 4.7e-14 82.4 173 37.0
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 1.4e-13 80.9 282 28.4
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.4e-13 80.9 293 28.3
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.8e-13 80.5 280 30.7
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 3.1e-13 79.7 284 28.2
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 3.1e-13 79.7 254 32.3
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.0e-13 79.3 230 31.7
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 5.2e-13 79.0 292 27.7
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 6.8e-13 78.6 288 27.4
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 6.8e-13 78.6 283 27.9
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 8.9e-13 78.2 285 27.4
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 1.2e-12 77.8 283 27.6
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 1.5e-12 77.4 283 28.6
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 2.0e-12 77.0 312 27.6
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 2.6e-12 76.6 161 36.6
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 3.4e-12 76.3 237 31.6
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 4.4e-12 75.9 262 27.1
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 5.8e-12 75.5 278 30.2
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.6e-12 75.1 281 27.4
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 9.9e-12 74.7 192 31.2
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 9.9e-12 74.7 280 29.6
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 1.3e-11 74.3 280 28.2
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.3e-11 74.3 170 33.5
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.7e-11 73.9 310 28.1
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 2.2e-11 73.6 290 26.2
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 2.9e-11 73.2 283 26.9
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 2.9e-11 73.2 280 27.5
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.9e-11 73.2 280 27.9
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 4.9e-11 72.4 293 28.0
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 4.9e-11 72.4 276 29.3
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 6.4e-11 72.0 176 34.1
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 8.4e-11 71.6 289 28.4
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 8.4e-11 71.6 285 29.1
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 1.1e-10 71.2 215 28.8
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.9e-10 70.5 228 27.6
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.9e-10 70.5 282 26.6
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.9e-10 70.5 280 27.5
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.9e-10 70.5 272 30.9
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 2.4e-10 70.1 281 27.8
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 3.2e-10 69.7 281 29.9
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 4.1e-10 69.3 243 29.6
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 4.1e-10 69.3 239 28.5
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 9.2e-10 68.2 288 28.8
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.2e-09 67.8 274 28.5
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.6e-09 67.4 270 27.8
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 1.6e-09 67.4 212 27.8
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 2.1e-09 67.0 276 29.3
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 3.5e-09 66.2 275 29.8
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 3.5e-09 66.2 275 29.8
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 6.0e-09 65.5 278 27.7
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.0e-08 64.7 304 26.3
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 1.0e-08 64.7 288 26.4
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.3e-08 64.3 249 27.3
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 6.6e-08 62.0 276 30.1
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 6.6e-08 62.0 92 38.0
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 4.3e-07 59.3 176 30.1
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 9.6e-07 58.2 283 25.1
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 9.6e-07 58.2 255 28.2
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 2.8e-06 56.6 175 30.9
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 8.1e-06 55.1 259 30.9


User provided reference genes

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