Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g151390 Amaranthus hybridus HOM05D005503 ORTHO05D008949 1.4e-30 135.6 67 100.0
Ah.13g077080 Amaranthus hybridus HOM05D005503 ORTHO05D008949 4.3e-27 124.0 67 92.5
EL10Ac3g07150 Beta vulgaris HOM05D005503 ORTHO05D008949 1.3e-26 122.5 67 88.1
Hund24647 Selenicereus undatus HOM05D005503 ORTHO05D008949 1.3e-23 112.5 67 80.6
AUR62024521 Chenopodium quinoa HOM05D005503 ORTHO05D008949 1.7e-23 112.1 67 80.6
GSVIVG01005042001 Vitis vinifera HOM05D005503 ORTHO05D008949 2.1e-21 105.1 61 80.3
Psat3g074800 Pisum sativum HOM05D005503 ORTHO05D008949 3.5e-21 104.4 59 81.4
Ciclev10006881m.g Citrus clementina HOM05D005503 ORTHO05D008949 7.9e-21 103.2 61 77.0
Glyma.03G133400 Glycine max HOM05D005503 ORTHO05D008949 7.9e-21 103.2 59 79.7
Glyma.19G135200 Glycine max HOM05D005503 ORTHO05D008949 7.9e-21 103.2 59 79.7
Sabra06G0033300 Salix brachista HOM05D005503 ORTHO05D008949 7.9e-21 103.2 61 77.0
Sc13g0001540 Simmondsia chinensis HOM05D005503 ORTHO05D008949 7.9e-21 103.2 61 82.0
VMungo1383G2568 Vigna mungo HOM05D005503 ORTHO05D008949 7.9e-21 103.2 59 79.7
CiPaw.10G036000 Carya illinoinensis HOM05D005503 ORTHO05D008949 1.0e-20 102.8 67 73.1
Lalb_Chr20g0110371 Lupinus albus HOM05D005503 ORTHO05D008949 1.0e-20 102.8 67 73.1
Medtr7g090930 Medicago truncatula HOM05D005503 ORTHO05D008949 1.0e-20 102.8 59 79.7
Nn2g15105 Nelumbo nucifera HOM05D005503 ORTHO05D008949 1.0e-20 102.8 66 74.2
TPR.G7098 Trifolium pratense HOM05D005503 ORTHO05D008949 1.0e-20 102.8 59 81.4
MBI13_g26145_MAGBIO Magnolia biondii HOM05D005503 ORTHO05D008949 1.3e-20 102.4 66 75.8
Lalb_Chr20g0115621 Lupinus albus HOM05D005503 ORTHO05D008949 2.3e-20 101.7 59 79.7
Potri.006G047800 Populus trichocarpa HOM05D005503 ORTHO05D008949 2.3e-20 101.7 61 75.4
RcHm_v2.0_Chr3g0483941 Rosa chinensis HOM05D005503 ORTHO05D008949 2.3e-20 101.7 59 78.0
TAR636G0173 Trochodendron aralioides HOM05D005503 ORTHO05D008949 2.3e-20 101.7 67 73.1
PGR004G2205 Punica granatum HOM05D005503 ORTHO05D008949 3.9e-20 100.9 67 71.6
Actinidia39197 Actinidia chinensis HOM05D005503 ORTHO05D008949 5.1e-20 100.5 61 78.7
Ca_22958_v3 Cicer arietinum L. HOM05D005503 ORTHO05D008949 5.1e-20 100.5 59 79.7
Lj1g0008024 Lotus japonicus HOM05D005503 ORTHO05D008949 5.1e-20 100.5 59 78.0
Potri.016G044001 Populus trichocarpa HOM05D005503 ORTHO05D008949 5.1e-20 100.5 61 75.4
Prupe.7G052400 Prunus persica HOM05D005503 ORTHO05D008949 5.1e-20 100.5 67 71.6
Phvul.001G128900 Phaseolus vulgaris HOM05D005503 ORTHO05D008949 6.7e-20 100.1 59 78.0
Haze_19781 Corylus avellana HOM05D005503 ORTHO05D008949 1.1e-19 99.4 61 75.4
Hma1.2p1_0110F.1_g052960 Hydrangea macrophylla HOM05D005503 ORTHO05D008949 1.1e-19 99.4 61 78.7
Aqoxy2G00233 Aquilegia oxysepala HOM05D005503 ORTHO05D008949 1.5e-19 99.0 66 69.7
Dinv39668 Davidia involucrata HOM05D005503 ORTHO05D008949 1.5e-19 99.0 61 77.0
MD12G1083400 Malus domestica HOM05D005503 ORTHO05D008949 1.5e-19 99.0 67 70.1
Rhsim03G0032200 Rhododendron simsii HOM05D005503 ORTHO05D008949 1.5e-19 99.0 59 79.7
Atru.chr1.1203 Acer truncatum HOM05D005503 ORTHO05D008949 1.9e-19 98.6 61 77.0
ClCG10G015610 Citrullus lanatus HOM05D005503 ORTHO05D008949 1.9e-19 98.6 67 67.2
FvH4_6g24610 Fragaria vesca HOM05D005503 ORTHO05D008949 1.9e-19 98.6 59 76.3
FAN02G3508 Fragaria x ananassa HOM05D005503 ORTHO05D008949 1.9e-19 98.6 59 76.3
FAN14G5504 Fragaria x ananassa HOM05D005503 ORTHO05D008949 1.9e-19 98.6 59 76.3
Cpa.g.sc1079.1 Carica papaya HOM05D005503 ORTHO05D008949 2.5e-19 98.2 61 75.4
COL.COLO4_36524 Corchorus olitorius HOM05D005503 ORTHO05D008949 2.5e-19 98.2 67 67.2
Gohir.A09G120500 Gossypium hirsutum HOM05D005503 ORTHO05D008949 2.5e-19 98.2 61 72.1
Gohir.D09G116600 Gossypium hirsutum HOM05D005503 ORTHO05D008949 2.5e-19 98.2 61 72.1
Gorai.006G134900 Gossypium raimondii HOM05D005503 ORTHO05D008949 2.5e-19 98.2 61 72.1
CANSAT80G2315 Cannabis sativa HOM05D005503 ORTHO05D008949 3.3e-19 97.8 61 75.4
Thecc.05G146600 Theobroma cacao HOM05D005503 ORTHO05D008949 3.3e-19 97.8 61 73.8
Aa31LG1G21320 Aethionema arabicum HOM05D005503 ORTHO05D008949 4.3e-19 97.4 62 74.2
Duzib093G0766 Durio zibethinus HOM05D005503 ORTHO05D008949 4.3e-19 97.4 61 75.4
FAN05G5816 Fragaria x ananassa HOM05D005503 ORTHO05D008949 4.3e-19 97.4 59 76.3
Sed0013086 Sechium edule HOM05D005503 ORTHO05D008949 4.3e-19 97.4 67 67.2
ATR0721G098 Amborella trichopoda HOM05D005503 ORTHO05D008949 5.6e-19 97.1 59 76.3
vmacro21945 Vaccinium macrocarpon HOM05D005503 ORTHO05D008949 5.6e-19 97.1 61 75.4
ECA247G0412 Erigeron canadensis HOM05D005503 ORTHO05D008949 7.4e-19 96.7 66 66.7
Lsat_1_v5_gn_9_32141 Lactuca sativa HOM05D005503 ORTHO05D008949 7.4e-19 96.7 61 73.8
Manes.09G011000 Manihot esculenta HOM05D005503 ORTHO05D008949 7.4e-19 96.7 61 75.4
MELO3C009814.2 Cucumis melo HOM05D005503 ORTHO05D008949 9.6e-19 96.3 67 65.7
CsaV3_3G040800 Cucumis sativus L. HOM05D005503 ORTHO05D008949 9.6e-19 96.3 67 65.7
FAN09G2222 Fragaria x ananassa HOM05D005503 ORTHO05D008949 9.6e-19 96.3 59 74.6
HPP92_027974 Vanilla planifolia HOM05D005503 ORTHO05D008949 9.6e-19 96.3 67 67.2
Eucgr.A02305 Eucalyptus grandis HOM05D005503 ORTHO05D008949 2.1e-18 95.1 67 71.6
Cc06_g18190 Coffea canephora HOM05D005503 ORTHO05D008949 3.6e-18 94.4 63 71.4
arahy.Tifrunner.gnm1.ann1.Z9GIA8 Arachis hypogaea HOM05D005503 ORTHO05D008949 4.8e-18 94.0 61 75.4
HanXRQChr10g0298211 Helianthus annuus HOM05D005503 ORTHO05D008949 8.1e-18 93.2 66 69.7
arahy.Tifrunner.gnm1.ann1.BJA8E7 Arachis hypogaea HOM05D005503 ORTHO05D008949 1.1e-17 92.8 61 75.4
CSS0039750 Camellia sinensis var. sinensis HOM05D005503 ORTHO05D008949 1.4e-17 92.4 59 74.6
Thhalv10016002m.g Eutrema salsugineum HOM05D005503 ORTHO05D008949 1.8e-17 92.0 62 67.7
THA.LOC104816402 Tarenaya hassleriana HOM05D005503 ORTHO05D008949 1.8e-17 92.0 62 71.0
A10p32120 Brassica napus HOM05D005503 ORTHO05D008949 3.1e-17 91.3 62 69.4
C09p72840 Brassica napus HOM05D005503 ORTHO05D008949 3.1e-17 91.3 62 69.4
BolC9t60020H Brassica oleracea HOM05D005503 ORTHO05D008949 3.1e-17 91.3 59 72.9
BraA10t45255Z Brassica rapa HOM05D005503 ORTHO05D008949 3.1e-17 91.3 62 69.4
CARHR209280 Cardamine hirsuta HOM05D005503 ORTHO05D008949 3.1e-17 91.3 62 67.7
QL07p004035 Quercus lobata HOM05D005503 ORTHO05D008949 3.1e-17 91.3 66 65.2
DCAR_020514 Daucus carota HOM05D005503 ORTHO05D008949 5.3e-17 90.5 62 69.4
Peaxi162Scf00130g00911 Petunia axillaris HOM05D005503 ORTHO05D008949 6.9e-17 90.1 61 68.9
Sp6g38760 Schrenkiella parvula HOM05D005503 ORTHO05D008949 6.9e-17 90.1 62 66.1
BcaC06g32102 Brassica carinata HOM05D005503 ORTHO05D008949 1.2e-16 89.4 62 67.7
Carub.0006s0293 Capsella rubella HOM05D005503 ORTHO05D008949 1.5e-16 89.0 62 67.7
TWI77G0247 Tripterygium wilfordii HOM05D005503 ORTHO05D008949 2.6e-16 88.2 61 68.9
AL6G13590 Arabidopsis lyrata HOM05D005503 ORTHO05D008949 3.4e-16 87.8 62 67.7
Nitab4.5_0001618g0220 Nicotiana tabacum HOM05D005503 ORTHO05D008949 3.4e-16 87.8 61 65.6
Oeu033023.1 Olea europaea HOM05D005503 ORTHO05D008949 4.5e-16 87.4 62 69.4
AT5G04000 Arabidopsis thaliana HOM05D005503 ORTHO05D008949 5.8e-16 87.0 59 69.5
CDE09G0956 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 5.8e-16 87.0 61 70.5
Duzib128G0213 Durio zibethinus HOM05D005503 ORTHO05D008949 5.8e-16 87.0 61 68.9
Nitab4.5_0000826g0100 Nicotiana tabacum HOM05D005503 ORTHO05D008949 1.7e-15 85.5 61 63.9
Oeu006918.1 Olea europaea HOM05D005503 ORTHO05D008949 1.7e-15 85.5 62 66.1
DCAR_013615 Daucus carota HOM05D005503 ORTHO05D008949 2.9e-15 84.7 60 68.3
Migut.J01714 Erythranthe guttata HOM05D005503 ORTHO05D008949 3.8e-15 84.3 62 62.9
Dinv18679 Davidia involucrata HOM05D005503 ORTHO05D008949 8.4e-15 83.2 59 66.1
Solyc04g016420.3 Solanum lycopersicum HOM05D005503 ORTHO05D008949 8.4e-15 83.2 61 62.3
Sopen04g008520 Solanum pennellii HOM05D005503 ORTHO05D008949 8.4e-15 83.2 61 62.3
PGSC0003DMG400012701 Solanum tuberosum HOM05D005503 ORTHO05D008949 8.4e-15 83.2 61 62.3
CAN.G1237.11 Capsicum annuum HOM05D005503 ORTHO05D008949 1.4e-14 82.4 61 62.3
SGA_v2.0_scaffold69G23127 Striga asiatica HOM05D005503 ORTHO05D008949 5.5e-14 80.5 63 61.9
Zm00001eb291660 Zea mays HOM05D005503 ORTHO05D008949 9.3e-14 79.7 63 63.5
PSO063G5603 Papaver somniferum HOM05D005503 ORTHO05D008949 4.6e-13 77.4 77 54.5
unitig_22.g6053 Utricularia gibba HOM05D005503 ORTHO05D008949 4.6e-13 77.4 61 60.7
SalBow6G3706 Salvia bowleyana HOM05D005503 ORTHO05D008949 6.0e-13 77.0 59 62.7
SalBow6G4155 Salvia bowleyana HOM05D005503 ORTHO05D008949 6.0e-13 77.0 59 62.7
Os05g0496000 Oryza sativa ssp. japonica HOM05D005503 ORTHO05D008949 7.9e-13 76.6 59 64.4
Mapoly0048s0063 Marchantia polymorpha HOM05D005503 ORTHO05D008949 2.3e-12 75.1 68 52.9
HPP92_018218 Vanilla planifolia HOM05D005503 ORTHO05D008949 2.4e-09 65.1 46 65.2
vmacro21963 Vaccinium macrocarpon HOM05D005503 ORTHO05D008949 9.0e-09 63.2 46 67.4
Hma1.2p1_0005F.1_g004410 Hydrangea macrophylla HOM05D005503 ORTHO05D008949 1.2e-08 62.8 60 60.0


User provided reference genes

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