Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 3.6e-45 184.5 89 100.0
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 7.0e-33 143.7 86 80.2
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 4.0e-20 101.3 63 76.2
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 4.0e-20 101.3 64 75.0
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 5.2e-20 100.9 66 69.7
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 1.2e-19 99.8 71 66.2
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 1.2e-19 99.8 58 77.6
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 1.2e-19 99.8 70 65.7
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 1.5e-19 99.4 70 71.4
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 2.0e-19 99.0 60 76.7
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 7.5e-19 97.1 70 68.6
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 7.5e-19 97.1 70 67.1
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 9.8e-19 96.7 71 64.8
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 1.3e-18 96.3 80 67.5
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 1.7e-18 95.9 67 64.2
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 1.7e-18 95.9 67 62.7
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 1.7e-18 95.9 67 62.7
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 1.7e-18 95.9 71 69.0
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 1.7e-18 95.9 70 68.6
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 1.7e-18 95.9 70 65.7
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 1.7e-18 95.9 59 72.9
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 2.2e-18 95.5 71 64.8
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 2.8e-18 95.1 69 66.7
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 2.8e-18 95.1 69 66.7
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 2.8e-18 95.1 66 66.7
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 3.7e-18 94.7 73 61.6
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 3.7e-18 94.7 78 60.3
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 4.8e-18 94.4 58 74.1
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 4.8e-18 94.4 71 64.8
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 4.8e-18 94.4 76 63.2
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 6.3e-18 94.0 73 63.0
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 8.3e-18 93.6 69 66.7
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 8.3e-18 93.6 64 64.1
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 1.1e-17 93.2 67 64.2
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 1.1e-17 93.2 59 67.8
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 1.1e-17 93.2 70 65.7
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 1.4e-17 92.8 67 62.7
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 1.4e-17 92.8 67 62.7
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 1.8e-17 92.4 66 66.7
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 1.8e-17 92.4 71 66.2
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 1.8e-17 92.4 69 65.2
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 2.4e-17 92.0 56 76.8
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 3.1e-17 91.7 68 63.2
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 3.1e-17 91.7 71 60.6
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 3.1e-17 91.7 54 75.9
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 4.1e-17 91.3 67 59.7
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 4.1e-17 91.3 79 59.5
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 4.1e-17 91.3 73 58.9
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 7.0e-17 90.5 67 59.7
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 7.0e-17 90.5 80 50.0
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 1.2e-16 89.7 74 56.8
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 2.0e-16 89.0 69 62.3
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 2.7e-16 88.6 58 69.0
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 2.7e-16 88.6 72 62.5
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 4.5e-16 87.8 83 55.4
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 7.7e-16 87.0 62 64.5
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 1.0e-15 86.7 62 62.9
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 1.7e-15 85.9 77 58.4
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 1.7e-15 85.9 59 59.3
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 2.3e-15 85.5 73 50.7
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 2.3e-15 85.5 58 60.3
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 3.8e-15 84.7 51 72.5
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 3.8e-15 84.7 66 63.6
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 3.8e-15 84.7 66 63.6
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 5.0e-15 84.3 74 51.4
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 8.6e-15 83.6 69 58.0
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 1.5e-14 82.8 53 64.2
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 1.9e-14 82.4 52 69.2
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 3.3e-14 81.6 49 73.5
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 9.5e-14 80.1 54 66.7
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 9.5e-14 80.1 74 52.7
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 1.6e-13 79.3 56 64.3
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 6.1e-13 77.4 57 68.4
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 8.0e-13 77.0 45 71.1
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 8.0e-13 77.0 47 70.2
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 1.4e-12 76.3 70 55.7
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 2.3e-12 75.5 44 72.7
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 2.3e-12 75.5 44 72.7
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 3.0e-12 75.1 69 53.6
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 3.0e-12 75.1 59 57.6
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 3.0e-12 75.1 57 64.9
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 5.2e-12 74.3 55 58.2
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 5.2e-12 74.3 57 61.4
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 2.0e-11 72.4 73 47.9
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 5.7e-11 70.9 67 49.3
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 1.3e-10 69.7 52 61.5
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 1.3e-10 69.7 45 62.2
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 1.7e-10 69.3 48 64.6
Nitab4.5_0000059g0210 Nicotiana tabacum HOM05D007586 ORTHO05D009554 4.9e-10 67.8 64 57.8
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 2.4e-09 65.5 64 46.9
FAN22G2185 Fragaria x ananassa HOM05D007586 ORTHO05D009554 3.1e-09 65.1 66 54.5
Hund24561 Selenicereus undatus HOM05D007586 ORTHO05D009554 7.0e-09 63.9 52 61.5
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 2.0e-08 62.4 37 67.6
Medtr2g020940 Medicago truncatula HOM05D007586 ORTHO05D009554 5.9e-08 60.8 46 58.7
Peaxi162Scf00095g00411 Petunia axillaris HOM05D007586 ORTHO05D009554 6.6e-07 57.4 56 55.4
Eucgr.B01188 Eucalyptus grandis HOM05D007586 ORTHO05D009554 1.5e-06 56.2 32 71.9


User provided reference genes

Program Settings