Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 8.2e-76 287.0 144 100.0
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 8.6e-33 144.1 81 82.7
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 8.9e-30 134.0 79 75.9
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 8.9e-30 134.0 79 74.7
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 3.4e-29 132.1 79 79.7
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 3.4e-29 132.1 79 74.7
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 3.4e-29 132.1 79 77.2
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 4.4e-29 131.7 79 73.4
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 5.8e-29 131.3 79 74.7
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 5.8e-29 131.3 79 75.9
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 7.6e-29 131.0 79 73.4
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 7.6e-29 131.0 79 73.4
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 1.3e-28 130.2 79 74.7
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.3e-28 130.2 79 74.7
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 1.7e-28 129.8 79 70.9
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 2.2e-28 129.4 79 73.4
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 2.2e-28 129.4 79 70.9
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 2.2e-28 129.4 79 73.4
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 2.9e-28 129.0 79 73.4
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 2.9e-28 129.0 79 74.7
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 2.9e-28 129.0 79 73.4
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 2.9e-28 129.0 79 70.9
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 3.8e-28 128.6 94 62.8
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 4.9e-28 128.3 79 72.2
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 4.9e-28 128.3 79 73.4
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 6.4e-28 127.9 79 74.7
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 8.4e-28 127.5 79 70.9
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 1.1e-27 127.1 79 72.2
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 1.1e-27 127.1 97 62.9
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 1.4e-27 126.7 79 70.9
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 2.4e-27 125.9 79 75.9
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 3.2e-27 125.6 79 68.4
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 3.2e-27 125.6 79 70.9
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 3.2e-27 125.6 90 60.0
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 4.1e-27 125.2 79 70.9
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 4.1e-27 125.2 79 68.4
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 4.1e-27 125.2 88 65.9
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 5.4e-27 124.8 79 72.2
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 5.4e-27 124.8 79 72.2
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 7.1e-27 124.4 79 69.6
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 9.2e-27 124.0 79 67.1
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 9.2e-27 124.0 79 68.4
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 1.2e-26 123.6 82 67.1
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 1.6e-26 123.2 79 68.4
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 1.6e-26 123.2 79 72.2
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.6e-26 123.2 79 69.6
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 1.6e-26 123.2 79 69.6
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 1.6e-26 123.2 79 68.4
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 1.6e-26 123.2 79 70.9
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 2.1e-26 122.9 79 72.2
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 2.1e-26 122.9 79 70.9
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 2.1e-26 122.9 79 69.6
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 2.1e-26 122.9 79 69.6
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.7e-26 122.5 79 69.6
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 3.5e-26 122.1 79 68.4
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 3.5e-26 122.1 79 69.6
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 3.5e-26 122.1 79 69.6
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 3.5e-26 122.1 79 72.2
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 3.5e-26 122.1 79 68.4
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 4.6e-26 121.7 79 67.1
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 4.6e-26 121.7 79 65.8
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 4.6e-26 121.7 79 65.8
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 6.0e-26 121.3 79 70.9
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 6.0e-26 121.3 79 69.6
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 7.8e-26 120.9 79 68.4
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 1.0e-25 120.6 79 70.9
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 1.0e-25 120.6 79 67.1
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.3e-25 120.2 79 69.6
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 1.7e-25 119.8 79 68.4
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 3.0e-25 119.0 79 68.4
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 3.0e-25 119.0 79 65.8
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.0e-25 119.0 79 68.4
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.0e-25 119.0 79 68.4
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.0e-25 119.0 79 68.4
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.0e-25 119.0 79 68.4
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 3.0e-25 119.0 79 67.1
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 3.9e-25 118.6 79 68.4
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 3.9e-25 118.6 79 68.4
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 3.9e-25 118.6 79 65.8
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 3.9e-25 118.6 79 67.1
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 5.1e-25 118.2 82 59.8
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 5.1e-25 118.2 79 67.1
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 6.6e-25 117.9 80 63.8
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 8.7e-25 117.5 79 63.3
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 8.7e-25 117.5 79 67.1
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 8.7e-25 117.5 79 67.1
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.5e-24 116.7 79 64.6
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 2.5e-24 115.9 79 64.6
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 3.3e-24 115.5 79 64.6
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 3.3e-24 115.5 79 64.6
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 3.3e-24 115.5 79 67.1
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 4.3e-24 115.2 79 63.3
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 4.3e-24 115.2 79 63.3
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 5.6e-24 114.8 76 65.8
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 5.6e-24 114.8 79 65.8
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.2e-23 113.6 79 64.6
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 1.2e-23 113.6 79 60.8
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 1.2e-23 113.6 79 64.6
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 1.6e-23 113.2 79 63.3
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 2.1e-23 112.8 79 64.6
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 2.8e-23 112.5 79 59.5
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 2.8e-23 112.5 79 62.0
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 3.6e-23 112.1 79 62.0
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 3.6e-23 112.1 79 62.0
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 4.7e-23 111.7 67 71.6
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 6.2e-23 111.3 79 63.3
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 6.2e-23 111.3 79 63.3
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 6.2e-23 111.3 79 64.6
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 6.2e-23 111.3 79 62.0
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 8.1e-23 110.9 79 58.2
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 8.1e-23 110.9 79 63.3
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 1.1e-22 110.5 79 62.0
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.4e-22 110.2 67 73.1
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 1.8e-22 109.8 79 63.3
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 3.1e-22 109.0 79 63.3
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 4.0e-22 108.6 79 58.2
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 5.2e-22 108.2 79 62.0
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 5.2e-22 108.2 77 58.4
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 6.9e-22 107.8 79 60.8
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 6.9e-22 107.8 77 58.4
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 2.6e-21 105.9 79 59.5
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 3.4e-21 105.5 79 59.5
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 3.4e-21 105.5 79 60.8
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 3.8e-20 102.1 79 54.4
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 5.4e-19 98.2 79 54.4
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 5.4e-19 98.2 79 54.4
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 1.2e-18 97.1 79 57.0
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 2.1e-18 96.3 80 52.5
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 3.9e-17 92.0 58 70.7
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 1.9e-16 89.7 79 51.9
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 2.5e-16 89.4 77 49.4
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 3.3e-16 89.0 72 56.9
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 4.8e-15 85.1 81 45.7
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 3.4e-13 79.0 54 61.1
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 4.5e-13 78.6 83 48.2
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 4.5e-13 78.6 63 55.6
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.6e-07 60.1 36 72.2
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 1.1e-06 57.4 72 40.3
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 6.9e-06 54.7 74 35.1


User provided reference genes

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