Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g148520 Amaranthus hybridus HOM05D005669 ORTHO05D026298 2.8e-42 174.9 87 100.0
Ah.11g045150 Amaranthus hybridus HOM05D005669 ORTHO05D007632 3.0e-36 154.8 87 87.4
EL10Ac1g01890 Beta vulgaris HOM05D005669 ORTHO05D007632 3.0e-28 128.3 89 70.8
AUR62035163 Chenopodium quinoa HOM05D005669 ORTHO05D007632 1.9e-27 125.6 89 67.4
AUR62024103 Chenopodium quinoa HOM05D005669 ORTHO05D007632 4.3e-27 124.4 89 66.3
Dinv31980 Davidia involucrata HOM05D005669 ORTHO05D007632 2.7e-21 105.1 93 57.0
Ciclev10000240m.g Citrus clementina HOM05D005669 ORTHO05D007632 7.3e-19 97.1 95 52.6
Manes.05G126500 Manihot esculenta HOM05D005669 ORTHO05D007632 7.3e-19 97.1 93 54.8
Cpa.g.sc26.145 Carica papaya HOM05D005669 ORTHO05D007632 9.5e-19 96.7 94 54.3
Sc26g0004730 Simmondsia chinensis HOM05D005669 ORTHO05D007632 1.2e-18 96.3 84 51.2
Cfa014128 Carpinus fangiana HOM05D005669 ORTHO05D007632 2.1e-18 95.5 89 50.6
PGR031G0991 Punica granatum HOM05D005669 ORTHO05D007632 2.8e-18 95.1 81 56.8
Sabra02G0004300 Salix brachista HOM05D005669 ORTHO05D007632 2.8e-18 95.1 89 55.1
Eucgr.F03586 Eucalyptus grandis HOM05D005669 ORTHO05D007632 3.6e-18 94.7 85 54.1
Atru.chr13.76 Acer truncatum HOM05D005669 ORTHO05D007632 4.7e-18 94.4 91 53.8
Actinidia37907 Actinidia chinensis HOM05D005669 ORTHO05D007632 4.7e-18 94.4 85 56.5
Thecc.05G147000 Theobroma cacao HOM05D005669 ORTHO05D007632 8.1e-18 93.6 94 55.3
Potri.002G006100 Populus trichocarpa HOM05D005669 ORTHO05D007632 1.4e-17 92.8 89 53.9
Potri.005G255500 Populus trichocarpa HOM05D005669 ORTHO05D007632 1.4e-17 92.8 90 53.3
TAR628G1623 Trochodendron aralioides HOM05D005669 ORTHO05D007632 1.4e-17 92.8 93 53.8
COL.COLO4_36509 Corchorus olitorius HOM05D005669 ORTHO05D007632 1.8e-17 92.4 87 58.6
Haze_22850 Corylus avellana HOM05D005669 ORTHO05D007632 1.8e-17 92.4 89 49.4
TWI56G0116 Tripterygium wilfordii HOM05D005669 ORTHO05D007632 1.8e-17 92.4 90 56.7
Lalb_Chr05g0221901 Lupinus albus HOM05D005669 ORTHO05D007632 2.4e-17 92.0 84 53.6
Aqoxy6G01556 Aquilegia oxysepala HOM05D005669 ORTHO05D007632 3.1e-17 91.7 92 53.3
QL02p015311 Quercus lobata HOM05D005669 ORTHO05D007632 3.1e-17 91.7 96 51.0
TAR376G0261 Trochodendron aralioides HOM05D005669 ORTHO05D026298 3.1e-17 91.7 96 53.1
Glyma.09G155700 Glycine max HOM05D005669 ORTHO05D007632 4.0e-17 91.3 75 57.3
PSO541G5566 Papaver somniferum HOM05D005669 ORTHO05D007632 4.0e-17 91.3 92 50.0
PSO675G5095 Papaver somniferum HOM05D005669 ORTHO05D007632 4.0e-17 91.3 92 50.0
Gohir.A04G091400 Gossypium hirsutum HOM05D005669 ORTHO05D007632 5.2e-17 90.9 93 51.6
Gohir.D04G124200 Gossypium hirsutum HOM05D005669 ORTHO05D007632 5.2e-17 90.9 93 51.6
Gorai.012G107400 Gossypium raimondii HOM05D005669 ORTHO05D007632 5.2e-17 90.9 93 51.6
arahy.Tifrunner.gnm1.ann1.Y01VEH Arachis hypogaea HOM05D005669 ORTHO05D007632 6.8e-17 90.5 82 59.8
Duzib093G1476 Durio zibethinus HOM05D005669 ORTHO05D007632 6.8e-17 90.5 96 50.0
Prupe.1G498000 Prunus persica HOM05D005669 ORTHO05D007632 1.2e-16 89.7 87 52.9
Ca_17223_v3 Cicer arietinum L. HOM05D005669 ORTHO05D007632 2.0e-16 89.0 98 49.0
TWI12G0088 Tripterygium wilfordii HOM05D005669 ORTHO05D007632 2.0e-16 89.0 91 53.8
arahy.Tifrunner.gnm1.ann1.7LZL5F Arachis hypogaea HOM05D005669 ORTHO05D007632 2.6e-16 88.6 82 59.8
Medtr8g106680 Medicago truncatula HOM05D005669 ORTHO05D007632 2.6e-16 88.6 98 49.0
Glyma.05G243200 Glycine max HOM05D005669 ORTHO05D007632 3.4e-16 88.2 95 51.6
Lj4g0027418 Lotus japonicus HOM05D005669 ORTHO05D007632 4.4e-16 87.8 94 45.7
RcHm_v2.0_Chr6g0295721 Rosa chinensis HOM05D005669 ORTHO05D007632 5.8e-16 87.4 92 51.1
Atru.chr13.287 Acer truncatum HOM05D005669 ORTHO05D007632 7.6e-16 87.0 86 48.8
PSO170G6908 Papaver somniferum HOM05D005669 ORTHO05D007632 7.6e-16 87.0 96 52.1
CiPaw.07G134500 Carya illinoinensis HOM05D005669 ORTHO05D007632 9.9e-16 86.7 93 48.4
PSO357G0659 Papaver somniferum HOM05D005669 ORTHO05D007632 9.9e-16 86.7 96 52.1
TPR.G12831 Trifolium pratense HOM05D005669 ORTHO05D007632 9.9e-16 86.7 95 50.5
CsaV3_4G037550 Cucumis sativus L. HOM05D005669 ORTHO05D007632 1.3e-15 86.3 90 51.1
DCAR_020086 Daucus carota HOM05D005669 ORTHO05D007632 1.3e-15 86.3 88 51.1
ECA238G3105 Erigeron canadensis HOM05D005669 ORTHO05D007632 1.3e-15 86.3 90 43.3
FvH4_2g26870 Fragaria vesca HOM05D005669 ORTHO05D007632 1.3e-15 86.3 92 50.0
FAN20G0946 Fragaria x ananassa HOM05D005669 ORTHO05D007632 1.3e-15 86.3 92 50.0
Psat1g033840 Pisum sativum HOM05D005669 ORTHO05D007632 1.3e-15 86.3 95 49.5
Glyma.16G206400 Glycine max HOM05D005669 ORTHO05D007632 1.7e-15 85.9 87 50.6
VMungo0251G0358 Vigna mungo HOM05D005669 ORTHO05D007632 2.2e-15 85.5 94 46.8
Sabra05G0198000 Salix brachista HOM05D005669 ORTHO05D007632 2.9e-15 85.1 90 50.0
MELO3C017049.2 Cucumis melo HOM05D005669 ORTHO05D007632 3.8e-15 84.7 90 48.9
Nn5g31030 Nelumbo nucifera HOM05D005669 ORTHO05D007632 4.9e-15 84.3 93 48.4
Ca_25308_v3 Cicer arietinum L. HOM05D005669 ORTHO05D007632 6.4e-15 84.0 87 49.4
ClCG11G018950 Citrullus lanatus HOM05D005669 ORTHO05D007632 6.4e-15 84.0 93 49.5
Cc10_g00330 Coffea canephora HOM05D005669 ORTHO05D007632 8.4e-15 83.6 78 52.6
Lsat_1_v5_gn_2_2161 Lactuca sativa HOM05D005669 ORTHO05D007632 8.4e-15 83.6 85 43.5
Psat7g004160 Pisum sativum HOM05D005669 ORTHO05D007632 8.4e-15 83.6 98 45.9
FAN27G1463 Fragaria x ananassa HOM05D005669 ORTHO05D007632 1.4e-14 82.8 92 48.9
vmacro04423 Vaccinium macrocarpon HOM05D005669 ORTHO05D007632 1.4e-14 82.8 87 49.4
Migut.C00359 Erythranthe guttata HOM05D005669 ORTHO05D007632 1.9e-14 82.4 88 47.7
MBI14_g18952_MAGBIO Magnolia biondii HOM05D005669 ORTHO05D007632 2.4e-14 82.0 99 43.4
MSTRG.24914 Avicennia marina HOM05D005669 ORTHO05D007632 4.2e-14 81.3 82 52.4
Glyma.08G051000 Glycine max HOM05D005669 ORTHO05D007632 5.4e-14 80.9 97 47.4
Lj2g0000882 Lotus japonicus HOM05D005669 ORTHO05D007632 5.4e-14 80.9 88 47.7
AL1G51380 Arabidopsis lyrata HOM05D005669 ORTHO05D007632 9.2e-14 80.1 81 54.3
Thhalv10003646m.g Eutrema salsugineum HOM05D005669 ORTHO05D007632 9.2e-14 80.1 79 55.7
BcaB04g17779 Brassica carinata HOM05D005669 ORTHO05D007632 1.2e-13 79.7 75 56.0
unitig_32.g11141 Utricularia gibba HOM05D005669 ORTHO05D007632 1.2e-13 79.7 76 48.7
MSTRG.22085 Avicennia marina HOM05D005669 ORTHO05D007632 1.6e-13 79.3 84 52.4
HanXRQChr14g0427911 Helianthus annuus HOM05D005669 ORTHO05D007632 1.6e-13 79.3 90 44.4
Sp1g37310 Schrenkiella parvula HOM05D005669 ORTHO05D007632 3.5e-13 78.2 79 54.4
Sed0011906 Sechium edule HOM05D005669 ORTHO05D007632 3.5e-13 78.2 86 44.2
CARHR035190 Cardamine hirsuta HOM05D005669 ORTHO05D007632 4.6e-13 77.8 81 53.1
BcaC07g37454 Brassica carinata HOM05D005669 ORTHO05D007632 6.0e-13 77.4 75 56.0
A08p07670 Brassica napus HOM05D005669 ORTHO05D007632 6.0e-13 77.4 75 56.0
C08p09250 Brassica napus HOM05D005669 ORTHO05D007632 6.0e-13 77.4 75 56.0
BolC8t47774H Brassica oleracea HOM05D005669 ORTHO05D007632 6.0e-13 77.4 75 56.0
BraA08t32781Z Brassica rapa HOM05D005669 ORTHO05D007632 6.0e-13 77.4 75 56.0
CAN.G1781.6 Capsicum annuum HOM05D005669 ORTHO05D007632 1.0e-12 76.6 75 50.7
Nitab4.5_0012070g0010 Nicotiana tabacum HOM05D005669 ORTHO05D007632 1.3e-12 76.3 87 44.8
Phvul.002G326900 Phaseolus vulgaris HOM05D005669 ORTHO05D007632 1.3e-12 76.3 94 43.6
TPR.G7965 Trifolium pratense HOM05D005669 ORTHO05D007632 1.3e-12 76.3 90 45.6
CANSAT56G1505 Cannabis sativa HOM05D005669 ORTHO05D007632 1.7e-12 75.9 78 48.7
Phvul.004G130100 Phaseolus vulgaris HOM05D005669 ORTHO05D007632 1.7e-12 75.9 99 42.4
Medtr6g080430 Medicago truncatula HOM05D005669 ORTHO05D007632 2.3e-12 75.5 92 44.6
Peaxi162Scf00463g00035 Petunia axillaris HOM05D005669 ORTHO05D007632 2.3e-12 75.5 87 44.8
VMungo0464G1382 Vigna mungo HOM05D005669 ORTHO05D007632 3.9e-12 74.7 83 45.8
Lj4P811T82 Lonicera japonica HOM05D005669 ORTHO05D007632 6.6e-12 73.9 90 45.6
MSTRG.1001 Avicennia marina HOM05D005669 ORTHO05D007632 1.1e-11 73.2 84 46.4
Nitab4.5_0000119g0330 Nicotiana tabacum HOM05D005669 ORTHO05D007632 1.5e-11 72.8 87 43.7
Aa31sc286G30 Aethionema arabicum HOM05D005669 ORTHO05D007632 1.9e-11 72.4 75 52.0
Lalb_Chr24g0398011 Lupinus albus HOM05D005669 ORTHO05D007632 2.5e-11 72.0 91 46.2
Carub.0001s3430 Capsella rubella HOM05D005669 ORTHO05D007632 3.3e-11 71.6 69 58.0
AT1G42550 Arabidopsis thaliana HOM05D005669 ORTHO05D007632 5.6e-11 70.9 81 49.4
Solyc10g006330.3 Solanum lycopersicum HOM05D005669 ORTHO05D007632 5.6e-11 70.9 73 47.9
THA.LOC104813177 Tarenaya hassleriana HOM05D005669 ORTHO05D007632 7.3e-11 70.5 75 48.0
SalBow7G1312 Salvia bowleyana HOM05D005669 ORTHO05D007632 9.6e-11 70.1 73 49.3
MD08G1162900 Malus domestica HOM05D005669 ORTHO05D007632 1.6e-10 69.3 79 44.3
Sopen10g002280 Solanum pennellii HOM05D005669 ORTHO05D007632 2.1e-10 68.9 73 46.6
CSS0001195 Camellia sinensis var. sinensis HOM05D005669 ORTHO05D007632 2.8e-10 68.6 87 46.0
PGSC0003DMG400014391 Solanum tuberosum HOM05D005669 ORTHO05D007632 1.8e-09 65.9 73 45.2
ATR0807G083 Amborella trichopoda HOM05D005669 ORTHO05D007632 5.3e-09 64.3 75 49.3
HPP92_009984 Vanilla planifolia HOM05D005669 ORTHO05D007632 6.9e-09 63.9 78 47.4
Os09g0553900 Oryza sativa ssp. japonica HOM05D005669 ORTHO05D007632 1.2e-08 63.2 86 39.5
SGA_v2.0_scaffold26G11216 Striga asiatica HOM05D005669 ORTHO05D007632 1.7e-07 59.3 74 43.2
Zm00001eb320750 Zea mays HOM05D005669 ORTHO05D007632 8.4e-07 57.0 75 41.3
CDE02G2157 Ceratophyllum demersum HOM05D005669 ORTHO05D026298 1.1e-06 56.6 79 43.0
CDE05G3319 Ceratophyllum demersum HOM05D005669 ORTHO05D007632 1.9e-06 55.8 93 34.4
Actinidia33594 Actinidia chinensis HOM05D005669 ORTHO05D026298 2.4e-06 55.5 63 47.6


User provided reference genes

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