Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 0.0e+00 1088.6 796 100.0
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 2.8e-234 815.8 808 73.5
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 4.0e-212 742.3 796 71.5
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 2.2e-202 709.9 797 66.5
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 8.0e-189 664.8 796 62.4
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 2.5e-174 616.7 784 68.8
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.8e-172 610.5 800 56.2
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 3.8e-162 576.2 790 57.0
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 7.8e-160 568.5 837 55.9
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 2.3e-159 567.0 801 57.8
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 5.6e-158 562.4 798 62.7
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 7.3e-158 562.0 803 58.0
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 9.6e-158 561.6 795 56.6
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 4.0e-156 556.2 746 58.2
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 5.3e-156 555.8 746 58.2
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 2.6e-155 553.5 786 57.1
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.9e-153 547.4 800 51.1
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 7.1e-153 545.4 768 52.7
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 9.3e-153 545.0 761 56.2
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.7e-152 543.5 787 62.8
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.3e-151 541.2 787 59.1
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 2.3e-151 540.4 787 62.5
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 6.2e-149 532.3 801 51.7
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.1e-148 531.6 804 53.7
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 2.4e-148 530.4 792 53.5
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 6.9e-148 528.9 800 53.8
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 3.4e-147 526.6 787 53.7
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 1.9e-145 520.8 788 55.1
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 3.2e-145 520.0 738 55.3
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 5.5e-145 519.2 744 58.9
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.7e-144 516.9 796 54.0
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 1.8e-143 514.2 790 54.7
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 1.3e-141 508.1 761 49.3
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 6.2e-141 505.8 787 56.7
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 2.4e-140 503.8 809 52.4
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.0e-139 500.7 790 53.8
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 1.4e-137 494.6 771 51.9
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 9.3e-137 491.9 809 51.9
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 6.0e-136 489.2 801 53.7
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 7.9e-136 488.8 805 51.9
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.8e-135 487.6 802 51.5
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 3.9e-135 486.5 801 50.9
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 1.5e-134 484.6 800 51.5
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 5.7e-134 482.6 801 53.7
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 2.2e-133 480.7 793 52.7
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 3.7e-133 479.9 794 53.9
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 2.4e-132 477.2 765 54.1
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 2.4e-132 477.2 756 54.0
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 5.3e-132 476.1 800 53.9
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 1.5e-131 474.6 510 55.5
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 3.4e-131 473.4 812 51.1
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 5.9e-131 472.6 780 54.9
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.7e-130 471.1 767 50.2
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 2.5e-129 467.2 760 47.6
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 9.4e-129 465.3 752 52.7
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.2e-128 464.9 790 52.4
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.0e-127 461.8 768 51.3
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.9e-126 457.6 795 55.5
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 2.5e-126 457.2 765 55.4
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.3e-125 454.9 762 51.3
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 6.9e-124 449.1 808 49.5
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 2.9e-122 443.7 787 47.5
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 7.2e-121 439.1 761 49.1
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 5.1e-119 433.0 762 48.4
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 6.7e-119 432.6 790 45.7
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 1.1e-118 431.8 791 47.9
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 3.3e-118 430.3 789 49.2
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 8.2e-117 425.6 788 48.9
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.8e-116 424.5 745 51.9
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.8e-116 424.5 745 51.9
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.8e-116 424.5 795 46.0
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 1.2e-115 421.8 790 48.2
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.3e-114 418.3 812 48.2
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 2.2e-114 417.5 760 47.1
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 8.5e-114 415.6 791 52.6
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 6.1e-112 409.5 744 43.8
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 5.2e-111 406.4 734 49.0
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 2.0e-110 404.4 750 50.9
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 3.3e-110 403.7 809 47.3
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.3e-110 403.7 809 47.3
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 3.3e-110 403.7 737 48.2
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.7e-109 401.4 752 47.9
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 4.8e-109 399.8 753 48.7
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 1.1e-108 398.7 776 42.8
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 6.5e-106 389.4 856 44.2
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.6e-104 384.8 827 48.7
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 2.7e-104 384.0 746 45.4
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 8.0e-104 382.5 791 43.4
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 8.8e-103 379.0 799 47.8
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 4.4e-102 376.7 791 42.9
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 5.0e-98 363.2 800 46.6
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 5.5e-97 359.8 800 50.2
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 1.2e-96 358.6 801 46.2
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 2.8e-93 347.4 775 52.8
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.8e-87 328.2 498 44.8
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 5.7e-86 323.2 763 40.1
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 5.4e-84 316.6 810 36.9
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 4.9e-77 293.5 417 45.8
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 2.0e-75 288.1 727 31.5
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.1e-73 282.3 728 44.4
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 2.8e-72 277.7 750 38.9
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 3.1e-71 274.2 563 38.4
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 2.2e-61 241.5 549 52.5
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 3.7e-61 240.7 548 50.2
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 4.9e-61 240.4 775 30.3
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.5e-54 218.8 221 58.8
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 7.8e-51 206.5 260 47.7
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.0e-50 204.5 247 48.2
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.3e-48 199.1 510 35.7
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 6.0e-43 180.3 513 45.4
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 7.8e-43 179.9 224 48.2
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 4.8e-40 170.6 202 51.0
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 5.3e-39 167.2 383 53.3
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 2.4e-36 158.3 190 53.2
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-31 142.5 369 37.1
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 4.3e-25 120.9 130 54.6
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 2.6e-22 111.7 135 54.8
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 4.5e-22 110.9 153 48.4
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 2.9e-21 108.2 282 59.6
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 5.1e-18 97.4 124 50.8
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 7.4e-17 93.6 130 46.2
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 7.4e-17 93.6 140 45.7
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 3.1e-15 88.2 177 36.2
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.2e-14 86.3 202 36.1
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 8.5e-13 80.1 144 36.1
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 8.5e-13 80.1 123 45.5
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 2.5e-12 78.6 69 58.0
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 1.4e-10 72.8 95 66.3
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 8.8e-10 70.1 41 80.5
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 2.0e-09 68.9 40 85.0
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.7e-08 64.7 118 42.4
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 3.1e-07 61.6 67 52.2
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 3.1e-07 61.6 67 52.2
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.2e-06 59.7 103 38.8


User provided reference genes

Program Settings