Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 3.0e-298 1027.7 506 100.0
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 2.4e-194 682.6 508 66.5
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 3.0e-173 612.5 508 61.4
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 2.5e-135 486.5 464 54.3
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 1.0e-128 464.5 523 47.6
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 7.3e-127 458.4 524 48.1
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 1.3e-123 447.6 513 46.4
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 1.2e-121 441.0 520 47.7
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 2.7e-121 439.9 516 48.3
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 6.8e-117 425.2 510 46.3
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 3.4e-116 422.9 517 46.6
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 9.8e-116 421.4 534 45.9
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 1.3e-115 421.0 512 45.7
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 3.7e-115 419.5 514 45.7
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 6.4e-115 418.7 511 45.2
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 7.1e-114 415.2 518 44.0
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 9.2e-114 414.8 461 49.5
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 9.2e-114 414.8 511 43.8
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 2.3e-112 410.2 514 44.6
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 3.3e-111 406.4 522 45.0
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 9.5e-111 404.8 522 44.6
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 3.6e-110 402.9 515 46.2
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 2.3e-109 400.2 515 46.0
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 2.3e-109 400.2 515 46.2
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 5.2e-109 399.1 511 43.8
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 6.8e-109 398.7 516 44.4
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 3.7e-107 392.9 510 43.5
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 6.4e-107 392.1 512 45.3
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 3.2e-106 389.8 512 43.4
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 4.1e-106 389.4 518 44.2
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 7.1e-106 388.7 512 44.3
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 1.2e-105 387.9 514 43.6
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 2.7e-105 386.7 512 43.9
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 6.0e-105 385.6 520 44.6
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.1e-103 381.3 479 45.1
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 1.9e-103 380.6 519 42.2
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.3e-103 379.8 509 43.0
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 4.3e-103 379.4 510 42.2
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 9.6e-103 378.3 517 42.4
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 4.7e-102 375.9 513 40.9
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 1.1e-101 374.8 511 41.9
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 1.8e-101 374.0 511 44.0
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 2.0e-100 370.5 465 45.4
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 5.8e-100 369.0 525 43.2
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 1.3e-99 367.9 512 39.8
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 3.8e-99 366.3 640 37.7
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 2.4e-98 363.6 521 41.5
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 4.6e-97 359.4 512 42.0
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 1.1e-95 354.8 514 41.6
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 1.1e-95 354.8 524 40.5
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 1.3e-94 351.3 460 43.5
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 6.2e-94 349.0 488 42.0
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 9.0e-93 345.1 516 39.3
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 2.6e-92 343.6 510 39.6
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 3.4e-92 343.2 359 51.0
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 4.4e-92 342.8 415 45.1
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 9.9e-92 341.7 510 40.2
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 1.3e-91 341.3 523 40.7
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 2.2e-91 340.5 507 40.2
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 6.4e-91 339.0 525 40.8
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 6.4e-91 339.0 524 40.3
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 1.9e-90 337.4 520 40.2
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 2.4e-90 337.0 518 39.4
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 2.7e-89 333.6 517 39.5
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 4.6e-89 332.8 516 39.9
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 6.0e-89 332.4 517 41.2
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 6.0e-89 332.4 508 39.0
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 1.1e-87 328.2 532 38.0
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 3.3e-87 326.6 510 39.2
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 5.6e-87 325.9 462 41.8
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 1.1e-85 321.6 510 40.8
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 1.4e-85 321.2 444 42.6
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 4.0e-85 319.7 515 39.2
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 1.2e-84 318.2 403 43.9
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 6.4e-83 312.4 523 38.0
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 1.1e-82 311.6 305 51.5
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 9.6e-79 298.5 444 41.4
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 1.3e-78 298.1 494 36.8
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 5.3e-77 292.7 521 36.1
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 2.0e-76 290.8 666 32.0
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 4.9e-75 286.2 404 41.6
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 7.1e-74 282.3 399 41.4
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 1.9e-71 274.2 362 43.6
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 3.3e-71 273.5 883 26.8
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 2.1e-70 270.8 363 42.4
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 1.1e-66 258.5 481 38.5
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 3.6e-65 253.4 329 44.7
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 2.6e-60 237.3 276 50.4
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 1.0e-56 225.3 447 34.2
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 4.4e-55 219.9 305 41.6
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 8.5e-51 205.7 544 29.4
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 7.2e-50 202.6 135 72.6
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 6.3e-46 189.5 254 42.5
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 2.0e-44 184.5 503 29.2
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 4.2e-42 176.8 324 36.7
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 9.4e-42 175.6 284 36.6
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 4.5e-36 156.8 287 34.8
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 1.1e-34 152.1 280 33.9
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 2.5e-34 151.0 148 54.1
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 7.5e-31 139.4 137 51.8
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 2.2e-30 137.9 114 56.1
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 8.3e-30 136.0 158 46.8
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 7.2e-26 122.9 266 33.1
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 1.2e-25 122.1 576 23.4
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 2.1e-25 121.3 133 47.4
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 1.0e-24 119.0 464 24.8
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 3.4e-23 114.0 131 45.8
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 7.5e-23 112.8 213 34.3
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 2.2e-22 111.3 132 43.9
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 1.9e-18 98.2 244 29.5
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 9.5e-18 95.9 169 34.3
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 1.4e-13 82.0 135 35.6
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 2.0e-12 78.2 124 37.1
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 2.3e-11 74.7 132 36.4
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 5.0e-11 73.6 138 37.0
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 5.0e-11 73.6 138 37.0
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 1.1e-10 72.4 251 28.3
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 9.8e-07 59.3 90 36.7
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 2.2e-06 58.2 69 44.9
Atru.chr3.3228 Acer truncatum HOM05D000154 ORTHO05D000092 3.7e-06 57.4 61 45.9
BcaB01g04934 Brassica carinata HOM05D005725 ORTHO05D093362 8.3e-06 56.2 59 50.8


User provided reference genes

Program Settings