Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.1e-270 936.0 486 100.0
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 5.9e-219 764.2 487 82.5
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 7.8e-211 737.3 489 80.2
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.3e-210 735.7 489 79.8
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.8e-191 672.9 449 79.5
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.2e-173 612.8 494 66.0
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 1.1e-169 600.5 495 66.1
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.6e-166 589.3 491 65.0
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.4e-166 589.0 491 64.2
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.7e-165 586.6 491 64.8
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 2.9e-165 585.9 491 65.2
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.1e-164 583.9 491 65.2
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 2.7e-163 579.3 492 62.8
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.0e-162 577.4 490 63.9
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.8e-162 576.6 497 63.0
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 3.9e-162 575.5 491 64.0
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.6e-160 570.1 461 65.3
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.1e-160 569.7 493 62.5
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.4e-159 567.0 461 64.9
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.9e-159 564.7 505 60.0
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.5e-158 563.5 491 61.3
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 3.4e-158 562.4 491 62.3
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.5e-158 562.0 494 62.6
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 5.0e-157 558.5 492 61.2
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 8.5e-157 557.8 500 61.6
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.4e-156 557.0 491 60.5
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.9e-156 556.6 491 62.3
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 2.5e-156 556.2 492 60.4
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 9.3e-156 554.3 494 60.1
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 9.3e-156 554.3 499 60.1
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 2.1e-155 553.1 499 60.3
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.0e-154 550.8 494 59.9
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.8e-154 550.1 490 61.0
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.9e-153 546.6 491 59.1
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 7.4e-153 544.7 491 61.9
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 7.4e-153 544.7 494 60.1
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 4.8e-152 542.0 504 59.3
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 2.4e-151 539.7 495 59.4
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 9.1e-151 537.7 491 60.1
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.6e-150 536.2 504 59.1
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 7.7e-150 534.6 492 60.8
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.0e-149 534.3 511 58.7
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.4e-148 530.4 460 62.8
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.5e-148 529.6 499 57.9
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 4.2e-148 528.9 492 59.8
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 7.2e-148 528.1 495 58.6
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.3e-146 523.1 433 63.3
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.1e-146 521.9 490 59.2
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.4e-145 518.8 492 57.5
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 9.7e-145 517.7 495 58.6
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 9.7e-145 517.7 488 58.6
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.2e-144 516.5 492 58.3
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.8e-143 513.5 492 55.9
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.8e-143 513.5 498 55.6
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.5e-142 510.4 489 55.8
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.5e-142 510.4 489 56.4
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.6e-142 509.6 488 57.2
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.7e-142 508.1 491 55.4
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.7e-141 506.9 491 55.8
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.8e-141 505.8 493 56.8
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 3.8e-141 505.8 491 55.0
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.5e-141 504.6 484 54.8
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.9e-140 503.4 507 56.2
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 3.2e-140 502.7 432 64.6
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-139 500.7 522 53.1
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.1e-139 500.0 491 55.8
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 2.7e-139 499.6 488 57.2
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.6e-139 499.2 493 55.8
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 6.1e-139 498.4 488 55.3
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 7.9e-139 498.0 455 60.9
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.8e-138 496.9 405 65.2
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.9e-138 495.7 477 54.9
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.5e-137 493.8 546 52.6
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 2.6e-137 493.0 489 55.0
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.7e-137 491.1 514 51.9
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.7e-136 490.3 499 54.7
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 3.7e-136 489.2 498 55.4
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 4.8e-136 488.8 491 54.8
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 8.2e-136 488.0 497 55.1
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.1e-135 486.1 509 55.6
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.2e-134 484.2 491 52.7
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 2.6e-134 483.0 491 55.0
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 3.5e-134 482.6 488 55.1
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.7e-134 481.5 469 54.6
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.3e-133 480.7 453 59.2
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.2e-133 479.9 515 52.8
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 6.5e-133 478.4 496 54.0
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.1e-132 477.6 495 53.5
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.9e-132 476.9 492 54.3
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 2.7e-131 473.0 473 56.0
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 8.0e-131 471.5 459 56.2
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 5.2e-130 468.8 481 53.8
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 5.2e-130 468.8 455 57.8
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 6.7e-130 468.4 521 51.6
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 3.3e-129 466.1 489 51.7
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 4.4e-129 465.7 492 54.3
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 6.3e-128 461.8 589 47.4
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 4.1e-127 459.1 479 53.0
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.6e-126 457.2 462 54.5
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 4.5e-126 455.7 488 53.3
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 5.9e-126 455.3 483 52.4
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.0e-125 454.5 489 51.7
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.3e-125 454.1 485 52.8
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.3e-125 454.1 485 52.8
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.2e-125 453.4 492 52.2
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 3.8e-125 452.6 483 53.0
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.1e-124 451.1 484 53.3
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 3.2e-124 449.5 485 52.4
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 3.2e-124 449.5 425 56.5
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.6e-123 447.2 456 53.5
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 2.1e-123 446.8 485 52.0
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 2.1e-123 446.8 497 52.5
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 3.6e-123 446.0 492 51.8
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 3.7e-120 436.0 485 50.9
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 3.7e-120 436.0 489 52.4
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.4e-119 434.1 485 51.1
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 4.5e-118 429.1 488 50.6
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.0e-117 427.9 402 54.5
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.9e-117 426.4 539 47.1
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.9e-117 426.4 488 49.2
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.8e-117 426.0 539 47.1
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 6.1e-115 418.7 476 50.2
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 8.8e-114 414.8 503 50.5
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.5e-113 414.1 500 50.2
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 3.4e-113 412.9 452 50.7
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 7.5e-113 411.8 486 49.6
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.8e-111 407.1 385 56.4
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.1e-108 397.9 463 51.6
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.1e-108 397.9 488 47.5
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.4e-105 386.0 451 52.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 3.9e-101 372.9 488 45.5
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.3e-100 369.4 496 48.6
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 4.3e-100 369.4 344 61.0
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 8.0e-99 365.2 392 54.3
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.3e-93 347.8 412 50.2
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 3.9e-93 346.3 445 46.3
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.1e-92 344.7 484 46.7
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 2.8e-91 340.1 366 50.5
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 4.0e-90 336.3 447 42.3
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 2.0e-89 334.0 216 74.5
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.9e-87 327.4 216 70.8
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 7.8e-86 322.0 409 47.9
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.1e-84 318.2 316 51.3
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 2.4e-82 310.5 222 67.1
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.2e-80 303.9 357 46.2
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 7.3e-76 288.9 308 48.1
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 7.1e-63 245.7 180 63.9
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.1e-50 205.3 317 45.4
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 7.9e-46 189.1 156 61.5
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 7.4e-44 182.6 135 63.0
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.2e-41 175.3 239 47.3
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 1.3e-40 171.8 272 43.0
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 1.8e-37 161.4 247 36.8
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 2.8e-35 154.1 244 33.6
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 1.0e-32 145.6 190 38.9
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 1.6e-30 138.3 95 66.3
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 6.1e-30 136.3 176 48.9
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 4.7e-22 110.2 76 65.8
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.0e-20 104.8 114 53.5
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.2e-19 99.4 73 58.9
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 5.9e-17 93.2 129 47.3
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.4e-13 82.0 101 49.5
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 7.5e-12 76.3 60 56.7
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 6.5e-08 63.2 47 57.4
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 5.5e-07 60.1 74 47.3
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 9.4e-07 59.3 45 60.0


User provided reference genes

Program Settings