Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.5e-58 227.6 109 100.0
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 3.1e-27 125.2 66 87.9
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.8e-14 82.8 59 61.0
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.8e-14 82.8 69 59.4
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 5.2e-14 81.3 52 71.2
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 6.8e-14 80.9 70 57.1
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 8.9e-14 80.5 50 72.0
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 8.9e-14 80.5 52 73.1
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.2e-13 80.1 62 62.9
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 2.0e-13 79.3 62 61.3
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 2.6e-13 79.0 52 69.2
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 3.4e-13 78.6 57 61.4
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 3.4e-13 78.6 69 56.5
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 5.8e-13 77.8 61 57.4
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 5.8e-13 77.8 62 61.3
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 7.5e-13 77.4 55 67.3
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 7.5e-13 77.4 59 61.0
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 7.5e-13 77.4 53 66.0
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.8e-13 77.0 49 71.4
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.3e-12 76.6 59 62.7
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.3e-12 76.6 49 71.4
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.3e-12 76.6 60 58.3
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.3e-12 76.6 72 55.6
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.3e-12 76.6 53 69.8
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.7e-12 76.3 67 58.2
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.2e-12 75.9 54 66.7
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.2e-12 75.9 49 63.3
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.9e-12 75.5 61 62.3
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.7e-12 75.1 57 57.9
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 3.7e-12 75.1 49 67.3
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 3.7e-12 75.1 49 67.3
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 3.7e-12 75.1 49 67.3
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 3.7e-12 75.1 55 63.6
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 3.7e-12 75.1 49 67.3
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.7e-12 75.1 53 64.2
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 4.9e-12 74.7 49 71.4
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 4.9e-12 74.7 61 60.7
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 4.9e-12 74.7 74 58.1
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.9e-12 74.7 62 59.7
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 6.4e-12 74.3 59 59.3
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 6.4e-12 74.3 59 59.3
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 6.4e-12 74.3 59 59.3
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 6.4e-12 74.3 57 57.9
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 8.3e-12 73.9 49 67.3
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.1e-11 73.6 60 61.7
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.1e-11 73.6 49 67.3
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.1e-11 73.6 49 67.3
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.1e-11 73.6 49 67.3
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.1e-11 73.6 50 64.0
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.1e-11 73.6 53 64.2
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.4e-11 73.2 54 59.3
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.4e-11 73.2 65 56.9
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.4e-11 73.2 49 69.4
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.4e-11 73.2 51 64.7
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.9e-11 72.8 59 57.6
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.9e-11 72.8 54 59.3
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.9e-11 72.8 59 57.6
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.9e-11 72.8 59 57.6
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.9e-11 72.8 51 62.7
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.9e-11 72.8 49 65.3
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.9e-11 72.8 52 61.5
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.4e-11 72.4 54 61.1
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.4e-11 72.4 80 51.2
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.2e-11 72.0 49 65.3
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.2e-11 72.0 55 60.0
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 3.2e-11 72.0 49 63.3
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.2e-11 72.0 49 65.3
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 4.1e-11 71.6 54 59.3
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 4.1e-11 71.6 49 65.3
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.1e-11 71.6 51 66.7
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 4.1e-11 71.6 56 58.9
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 4.1e-11 71.6 52 63.5
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 5.4e-11 71.2 54 61.1
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 5.4e-11 71.2 49 65.3
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 7.0e-11 70.9 49 67.3
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 7.0e-11 70.9 49 63.3
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 7.0e-11 70.9 49 61.2
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 7.0e-11 70.9 61 57.4
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 9.2e-11 70.5 52 63.5
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 9.2e-11 70.5 50 58.0
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.2e-11 70.5 57 59.6
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.2e-11 70.5 62 58.1
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.2e-10 70.1 64 53.1
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.2e-10 70.1 54 61.1
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.2e-10 70.1 54 61.1
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-10 70.1 49 67.3
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.6e-10 69.7 67 50.7
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.6e-10 69.7 52 61.5
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.6e-10 69.7 49 63.3
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.7e-10 68.9 49 55.1
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 3.5e-10 68.6 60 53.3
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.6e-10 68.2 49 65.3
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.6e-10 68.2 49 63.3
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 4.6e-10 68.2 49 63.3
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.6e-10 68.2 58 55.2
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 4.6e-10 68.2 63 58.7
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.0e-10 67.8 54 57.4
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.0e-10 67.8 59 57.6
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.0e-09 67.0 49 61.2
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.0e-09 67.0 52 63.5
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.3e-09 66.6 55 58.2
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.7e-09 66.2 50 64.0
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.7e-09 66.2 53 54.7
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 3.0e-09 65.5 74 50.0
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 3.0e-09 65.5 54 59.3
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 5.0e-09 64.7 49 59.2
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 5.0e-09 64.7 56 55.4
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 5.0e-09 64.7 49 63.3
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 5.0e-09 64.7 49 63.3
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.6e-09 64.3 55 58.2
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 6.6e-09 64.3 49 61.2
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 6.6e-09 64.3 49 61.2
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 6.6e-09 64.3 61 49.2
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 6.6e-09 64.3 77 45.5
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 8.6e-09 63.9 58 55.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 8.6e-09 63.9 50 62.0
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.9e-08 62.8 63 50.8
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.9e-08 62.8 69 52.2
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.5e-08 62.4 49 57.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.5e-08 62.4 59 45.8
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.3e-08 61.6 50 62.0
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 5.6e-08 61.2 50 60.0
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 9.5e-08 60.5 84 42.9
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.1e-07 59.3 54 53.7
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 6.2e-07 57.8 57 49.1
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 6.2e-07 57.8 49 59.2
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 6.2e-07 57.8 53 50.9
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 8.0e-07 57.4 49 46.9
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 8.0e-07 57.4 50 50.0
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.4e-06 56.6 53 47.2
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 3.1e-06 55.5 60 50.0
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.9e-06 53.9 34 67.6


User provided reference genes

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