Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 4.8e-67 257.7 129 100.0
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.5e-65 252.7 129 97.7
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 1.5e-60 236.1 128 91.4
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.5e-57 226.1 127 87.4
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.0e-57 225.7 127 87.4
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 4.5e-57 224.6 127 85.0
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 7.7e-57 223.8 129 86.0
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 7.7e-57 223.8 128 83.6
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 7.7e-57 223.8 128 83.6
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 1.3e-56 223.0 127 86.6
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 2.2e-56 222.2 128 85.2
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 2.9e-56 221.9 129 84.5
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 3.8e-56 221.5 128 83.6
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 6.5e-56 220.7 128 85.2
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 8.5e-56 220.3 127 84.3
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 1.4e-55 219.5 128 82.8
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.9e-55 219.2 128 82.0
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 2.5e-55 218.8 127 81.9
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 2.5e-55 218.8 127 81.9
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 4.2e-55 218.0 128 80.5
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 7.2e-55 217.2 128 82.8
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 7.2e-55 217.2 127 83.5
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 7.2e-55 217.2 121 86.0
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 9.4e-55 216.9 127 81.9
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.6e-54 216.1 124 84.7
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 2.1e-54 215.7 127 81.1
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.6e-54 214.9 128 81.2
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 6.1e-54 214.2 127 81.1
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 6.1e-54 214.2 127 80.3
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 6.1e-54 214.2 128 79.7
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 6.1e-54 214.2 127 80.3
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 7.9e-54 213.8 124 83.1
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 7.9e-54 213.8 127 81.9
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 7.9e-54 213.8 128 78.9
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 1.0e-53 213.4 129 79.8
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.4e-53 213.0 128 79.7
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.8e-53 212.6 128 79.7
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.8e-53 212.6 127 78.7
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 2.3e-53 212.2 128 78.9
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 3.0e-53 211.8 124 81.5
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 3.0e-53 211.8 128 79.7
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 3.9e-53 211.5 128 78.9
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 3.9e-53 211.5 128 80.5
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 3.9e-53 211.5 124 80.6
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 3.9e-53 211.5 127 78.7
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 5.2e-53 211.1 128 79.7
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 6.7e-53 210.7 129 79.1
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 8.8e-53 210.3 127 80.3
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 8.8e-53 210.3 127 80.3
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.1e-52 209.9 124 83.1
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.5e-52 209.5 123 81.3
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.5e-52 209.5 128 77.3
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 2.0e-52 209.1 128 78.9
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 2.6e-52 208.8 128 78.9
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.6e-52 208.8 127 79.5
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 4.4e-52 208.0 128 78.9
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 4.4e-52 208.0 128 78.9
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 4.4e-52 208.0 128 79.7
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 5.7e-52 207.6 124 79.0
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 78.7
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 7.4e-52 207.2 118 83.9
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 7.4e-52 207.2 128 78.9
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 7.4e-52 207.2 128 79.7
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 9.7e-52 206.8 118 83.9
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 9.7e-52 206.8 127 78.0
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 9.7e-52 206.8 127 78.0
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 79.5
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 79.5
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.3e-51 206.5 128 78.9
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.7e-51 206.1 124 79.8
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 2.2e-51 205.7 128 78.9
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 2.2e-51 205.7 128 78.9
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 78.0
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 78.0
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 2.2e-51 205.7 124 79.8
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 2.8e-51 205.3 127 77.2
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 2.8e-51 205.3 127 78.0
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.8e-51 205.3 124 79.0
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 78.9
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 78.9
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 3.7e-51 204.9 128 75.0
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 4.8e-51 204.5 127 76.4
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 4.8e-51 204.5 127 78.7
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.8e-51 204.5 127 78.7
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 6.3e-51 204.1 128 77.3
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 6.3e-51 204.1 128 78.9
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 6.3e-51 204.1 128 78.9
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 6.3e-51 204.1 128 78.9
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 8.2e-51 203.8 128 77.3
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 78.0
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.4e-50 203.0 128 78.1
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 1.4e-50 203.0 128 78.1
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 78.0
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 78.0
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 2.4e-50 202.2 129 77.5
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 76.4
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.1e-50 201.8 127 78.0
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 7.0e-50 200.7 128 75.8
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 1.2e-49 199.9 129 79.1
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 2.6e-49 198.7 129 77.5
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 3.5e-49 198.4 128 75.8
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.5e-49 198.4 127 77.2
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 1.0e-48 196.8 128 73.4
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 2.9e-48 195.3 124 76.6
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 5.0e-48 194.5 127 71.7
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 5.0e-48 194.5 128 74.2
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 6.5e-48 194.1 128 73.4
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 1.9e-47 192.6 129 72.9
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 5.5e-47 191.0 171 59.6
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 5.5e-47 191.0 128 76.6
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.0e-45 185.3 106 84.9
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 4.0e-45 184.9 118 73.7
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 1.3e-43 179.9 130 74.6
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 2.9e-40 168.7 96 81.2
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 6.1e-38 161.0 108 76.9
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 1.2e-33 146.7 88 83.0
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.9e-33 144.4 82 84.1
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.9e-31 139.4 82 78.0
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 5.2e-29 131.3 74 86.5
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.2e-28 130.2 80 78.8
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 8.3e-27 124.0 102 59.8
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 7.8e-25 117.5 88 63.6
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 4.3e-23 111.7 89 62.9
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 8.0e-22 107.5 127 50.4
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.0e-21 105.5 61 85.2
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 5.2e-21 104.8 67 74.6
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.4e-20 101.7 67 73.1
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.9e-19 99.0 57 86.0
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 2.7e-17 92.4 82 53.7
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 3.6e-14 82.0 51 78.4
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 8.9e-13 77.4 81 48.1
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.5e-12 76.6 116 47.4
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 1.2e-09 67.0 59 47.5
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 2.3e-08 62.8 54 64.8
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.9e-08 62.0 36 80.6
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.1e-07 60.5 40 67.5
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 1.5e-07 60.1 54 63.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 3.3e-07 58.9 54 63.0
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 9.5e-07 57.4 54 63.0


User provided reference genes

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