Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 6.3e-76 287.3 143 100.0
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.6e-58 228.8 151 80.1
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 2.5e-56 222.2 151 76.8
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.2e-56 221.9 151 76.2
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.2e-56 221.9 151 76.2
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 5.5e-56 221.1 151 74.8
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.7e-52 209.5 151 71.5
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.7e-52 209.5 151 71.5
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 2.8e-52 208.8 151 72.2
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 2.8e-52 208.8 151 71.5
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 2.8e-52 208.8 151 71.5
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 3.7e-52 208.4 151 71.5
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 3.7e-52 208.4 151 72.2
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 4.8e-52 208.0 151 70.9
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 6.3e-52 207.6 151 70.9
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 8.2e-52 207.2 151 71.5
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.4e-51 206.5 151 70.2
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.4e-51 206.5 151 68.9
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 1.4e-51 206.5 151 70.9
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 1.8e-51 206.1 151 70.9
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.8e-51 206.1 151 70.9
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.8e-51 206.1 151 70.2
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.4e-51 205.7 151 70.9
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 7.0e-51 204.1 151 70.2
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 7.0e-51 204.1 151 70.9
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.2e-50 203.4 151 69.5
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.2e-50 203.4 151 70.2
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 2.7e-50 202.2 151 70.9
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 3.5e-50 201.8 151 68.2
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 4.5e-50 201.4 152 68.4
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.5e-50 201.4 151 70.2
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 5.9e-50 201.1 151 67.5
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 7.7e-50 200.7 151 66.9
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 7.7e-50 200.7 151 69.5
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.0e-49 200.3 151 70.2
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.0e-49 200.3 151 70.2
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.0e-49 200.3 151 70.2
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.0e-49 200.3 151 70.2
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.0e-49 200.3 151 70.2
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.0e-49 200.3 151 70.2
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.0e-49 200.3 151 70.2
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.0e-49 200.3 151 70.2
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.0e-49 200.3 151 67.5
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 1.0e-49 200.3 151 66.9
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.0e-49 200.3 151 70.2
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 1.3e-49 199.9 151 69.5
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 1.3e-49 199.9 151 66.9
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.3e-49 199.9 151 66.2
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.3e-49 199.9 151 67.5
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.7e-49 199.5 151 70.2
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.2e-49 199.1 151 69.5
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 2.9e-49 198.7 151 69.5
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 2.9e-49 198.7 151 69.5
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.9e-49 198.7 151 67.5
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 5.0e-49 198.0 151 69.5
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 5.0e-49 198.0 151 65.6
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.0e-49 198.0 151 65.6
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.0e-49 198.0 151 65.6
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.0e-49 198.0 151 65.6
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.0e-49 198.0 151 67.5
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.5e-49 197.6 151 66.9
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 6.5e-49 197.6 152 69.7
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 8.5e-49 197.2 151 68.9
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.1e-48 196.8 151 65.6
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.1e-48 196.8 156 64.1
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.1e-48 196.8 152 67.8
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.5e-48 196.4 151 68.9
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.5e-48 196.4 151 68.9
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.5e-48 196.4 151 68.9
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.9e-48 196.1 152 66.4
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.5e-48 195.7 151 66.2
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.5e-48 195.7 151 66.2
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 3.2e-48 195.3 151 67.5
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 4.2e-48 194.9 151 66.9
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 4.2e-48 194.9 151 66.9
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 5.5e-48 194.5 151 66.9
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.5e-48 194.5 151 66.2
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.2e-48 194.1 156 63.5
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.6e-47 193.0 151 66.9
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.6e-47 193.0 151 66.9
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 1.6e-47 193.0 161 64.6
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 1.6e-47 193.0 151 67.5
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.1e-47 192.6 151 66.9
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 2.1e-47 192.6 151 68.2
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 2.1e-47 192.6 151 65.6
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.7e-47 192.2 151 65.6
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.7e-47 192.2 151 66.2
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 3.6e-47 191.8 151 65.6
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.7e-47 191.4 151 66.2
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 8.0e-47 190.7 152 64.5
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.4e-46 189.9 152 65.1
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.8e-46 189.5 151 65.6
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.3e-46 189.1 151 66.2
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 3.0e-46 188.7 151 64.2
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 3.0e-46 188.7 151 66.2
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.2e-45 186.8 151 63.6
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.5e-45 186.4 151 64.9
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 2.6e-45 185.7 151 64.9
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 2.6e-45 185.7 151 64.9
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.4e-45 185.3 152 64.5
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 3.4e-45 185.3 151 64.9
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 3.4e-45 185.3 151 64.9
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 5.7e-45 184.5 152 61.8
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.3e-44 183.3 152 62.5
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.7e-44 183.0 151 62.9
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.8e-44 182.2 152 62.5
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.8e-44 181.4 152 62.5
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 6.3e-44 181.0 152 63.8
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 6.3e-44 181.0 151 62.9
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 8.3e-44 180.6 151 62.9
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.1e-43 180.3 151 62.9
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.1e-43 180.3 151 62.9
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 5.4e-43 177.9 151 61.6
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 5.4e-43 177.9 151 62.3
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.6e-42 176.4 151 61.6
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 3.5e-42 175.3 151 62.3
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.0e-41 173.7 156 60.9
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.0e-41 173.7 156 60.9
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 5.5e-40 167.9 151 58.3
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 5.5e-40 167.9 151 58.3
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 1.2e-39 166.8 156 59.6
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 5.7e-37 157.9 152 57.9
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.3e-36 156.8 156 57.1
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.0e-30 137.1 160 50.0
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.9e-28 129.0 123 54.5
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 4.9e-28 128.3 114 59.6
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.3e-25 120.2 78 74.4
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.7e-25 119.8 151 44.4
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 9.5e-24 114.0 154 44.8
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.1e-16 90.5 138 41.3
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 4.4e-13 78.6 119 42.0
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 9.9e-13 77.4 70 58.6
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 3.2e-11 72.4 163 29.4
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.3e-09 67.0 42 73.8
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.3e-09 67.0 151 30.5
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 5.2e-06 55.1 80 40.0
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 8.9e-06 54.3 40 65.0


User provided reference genes

Program Settings