Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 1.0e-128 463.4 227 100.0
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 2.8e-110 402.1 222 89.2
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 2.3e-109 399.1 222 88.3
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 4.2e-98 361.7 274 67.2
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 1.7e-96 356.3 222 76.1
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 2.0e-92 342.8 219 75.3
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 2.2e-91 339.3 216 76.4
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 3.8e-91 338.6 223 73.1
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 5.4e-90 334.7 220 73.2
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 9.3e-90 334.0 222 73.4
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 1.2e-89 333.6 225 72.0
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 4.6e-89 331.6 213 75.1
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 4.6e-89 331.6 209 75.6
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 1.3e-88 330.1 220 71.8
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 1.3e-88 330.1 220 71.8
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 5.6e-87 324.7 220 72.7
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 8.1e-86 320.9 213 73.2
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 2.4e-85 319.3 216 72.7
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 4.5e-84 315.1 216 71.3
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 5.8e-84 314.7 213 71.8
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 5.8e-84 314.7 219 68.5
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 1.7e-83 313.2 213 72.3
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 2.2e-83 312.8 218 71.1
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 4.9e-83 311.6 218 71.1
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 4.9e-83 311.6 214 71.5
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 6.4e-83 311.2 213 70.0
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 6.4e-83 311.2 216 70.8
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 6.4e-83 311.2 225 66.7
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 8.4e-83 310.8 221 68.8
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 1.1e-82 310.5 225 68.0
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 1.4e-82 310.1 213 70.4
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 1.9e-82 309.7 220 68.2
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 3.2e-82 308.9 213 70.4
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 3.2e-82 308.9 213 69.5
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 4.2e-82 308.5 192 75.5
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 4.2e-82 308.5 213 70.4
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 4.2e-82 308.5 213 70.4
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 5.4e-82 308.1 213 69.5
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 5.4e-82 308.1 222 67.1
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 5.4e-82 308.1 219 68.0
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 1.2e-81 307.0 213 69.5
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 1.6e-81 306.6 216 70.4
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 2.1e-81 306.2 219 68.9
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 3.5e-81 305.4 208 71.2
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 4.6e-81 305.1 209 70.3
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 6.0e-81 304.7 221 66.5
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 6.0e-81 304.7 213 69.5
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 1.0e-80 303.9 216 69.0
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 2.3e-80 302.8 210 67.1
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 2.3e-80 302.8 209 69.9
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 2.5e-79 299.3 210 68.6
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 7.4e-79 297.7 223 66.4
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 2.1e-78 296.2 216 68.1
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 2.8e-78 295.8 214 67.3
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 3.7e-78 295.4 214 68.2
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 6.2e-78 294.7 215 67.4
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 8.1e-78 294.3 226 63.3
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 1.8e-77 293.1 215 66.0
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 4.0e-77 292.0 229 64.6
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 5.3e-77 291.6 199 72.4
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 6.9e-77 291.2 214 65.9
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 6.9e-77 291.2 217 65.9
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 1.5e-76 290.0 216 66.2
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 1.5e-76 290.0 216 65.7
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 2.0e-76 289.7 215 64.7
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 2.6e-76 289.3 215 66.0
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 2.6e-76 289.3 215 66.0
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 3.4e-76 288.9 216 65.3
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 4.5e-76 288.5 216 65.3
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 5.8e-76 288.1 216 65.3
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 5.8e-76 288.1 217 64.1
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 7.6e-76 287.7 216 64.8
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 1.0e-75 287.3 221 63.3
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 1.7e-75 286.6 216 65.3
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 2.2e-75 286.2 207 66.7
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 2.9e-75 285.8 216 64.8
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 4.9e-75 285.0 217 63.6
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 6.5e-75 284.6 205 71.7
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 6.5e-75 284.6 216 64.8
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 6.5e-75 284.6 214 65.0
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 8.4e-75 284.3 216 63.0
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 1.4e-74 283.5 222 63.1
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 1.4e-74 283.5 216 62.5
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 1.4e-74 283.5 216 62.5
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 1.9e-74 283.1 216 63.9
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 2.5e-74 282.7 216 64.4
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 3.2e-74 282.3 210 65.2
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 4.2e-74 282.0 216 62.5
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 2.1e-73 279.6 219 62.6
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 2.7e-73 279.3 216 63.9
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 1.0e-72 277.3 209 65.1
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 1.8e-72 276.6 209 65.6
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 1.1e-71 273.9 212 63.2
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 1.5e-71 273.5 176 73.3
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 3.3e-71 272.3 205 65.4
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 4.3e-71 271.9 207 64.7
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 1.3e-70 270.4 193 67.9
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 2.1e-70 269.6 216 63.4
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 3.7e-70 268.9 209 63.2
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 1.8e-69 266.5 213 62.0
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 9.0e-69 264.2 198 65.2
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 1.2e-68 263.8 209 63.2
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 1.5e-68 263.5 213 61.5
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 3.8e-67 258.8 214 59.3
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 6.5e-67 258.1 214 60.3
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 2.5e-66 256.1 217 58.1
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 9.3e-66 254.2 217 57.6
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 3.5e-65 252.3 210 57.6
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 7.9e-65 251.1 214 57.5
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 1.8e-56 223.4 221 54.3
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 8.2e-54 214.5 152 67.1
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 5.3e-53 211.8 188 56.9
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 1.3e-51 207.2 215 48.4
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 8.5e-51 204.5 217 51.6
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 5.1e-48 195.3 211 46.4
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 1.5e-42 177.2 215 43.3
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 3.6e-33 146.0 202 38.1
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 2.6e-31 139.8 99 67.7
EL10Ac6g15726 Beta vulgaris HOM05D006615 ORTHO05D007999 4.5e-28 129.0 166 47.6
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 7.5e-23 111.7 94 57.4
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 4.7e-17 92.4 62 69.4
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 5.7e-15 85.5 82 53.7
Medtr5g016930 Medicago truncatula HOM05D006615 ORTHO05D007999 2.7e-12 76.6 53 67.9
CANSAT56G1867 Cannabis sativa HOM05D001219 ORTHO05D001017 4.7e-09 65.9 139 29.5
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 4.7e-09 65.9 62 48.4
COL.COLO4_29925 Corchorus olitorius HOM05D005998 ORTHO05D007664 2.3e-08 63.5 179 29.1
Dinv23311 Davidia involucrata HOM05D001219 ORTHO05D001017 5.2e-08 62.4 121 34.7
Medtr1g023530 Medicago truncatula HOM05D001219 ORTHO05D001017 5.2e-08 62.4 90 32.2
Psat3g054200 Pisum sativum HOM05D001219 ORTHO05D001017 8.9e-08 61.6 98 33.7
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 1.5e-07 60.8 206 29.1
Peaxi162Scf00332g00225 Petunia axillaris HOM05D001219 ORTHO05D001017 4.4e-07 59.3 227 25.1
Psat3g054040 Pisum sativum HOM05D001219 ORTHO05D001017 5.8e-07 58.9 140 30.7
TPR.G18060 Trifolium pratense HOM05D001219 ORTHO05D001017 5.8e-07 58.9 145 35.2
TPR.G25741 Trifolium pratense HOM05D001219 ORTHO05D001017 5.8e-07 58.9 161 28.0
Psat3g054120 Pisum sativum HOM05D001219 ORTHO05D001017 7.5e-07 58.5 140 30.0
Rhsim01G0030300 Rhododendron simsii HOM05D001219 ORTHO05D001017 7.5e-07 58.5 106 32.1
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 7.5e-07 58.5 123 32.5
Sc25g0001130 Simmondsia chinensis HOM05D001219 ORTHO05D001017 7.5e-07 58.5 132 34.8
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 9.8e-07 58.2 85 34.1
BcaC06g33410 Brassica carinata HOM05D002762 ORTHO05D004643 1.3e-06 57.8 103 32.0
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 1.3e-06 57.8 103 32.0
BolC7t45238H Brassica oleracea HOM05D002762 ORTHO05D004643 1.3e-06 57.8 103 32.0
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 2.2e-06 57.0 103 32.0
Sc03g0001840 Simmondsia chinensis HOM05D001905 ORTHO05D001820 2.2e-06 57.0 163 27.0
A03p49130 Brassica napus HOM05D002762 ORTHO05D004643 2.9e-06 56.6 103 32.0
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 2.9e-06 56.6 103 32.0
Phvul.010G159100 Phaseolus vulgaris HOM05D001219 ORTHO05D001017 2.9e-06 56.6 156 28.2
Eucgr.K02937 Eucalyptus grandis HOM05D002125 ORTHO05D002105 3.7e-06 56.2 126 31.7
SEGI_04733 Sequoiadendron giganteum HOM05D001219 ORTHO05D001017 3.7e-06 56.2 80 35.0
Psat3g054280 Pisum sativum HOM05D001219 ORTHO05D001017 4.9e-06 55.8 139 28.1
RcHm_v2.0_Chr3g0487451 Rosa chinensis HOM05D032618 ORTHO05D007999 6.4e-06 55.5 52 50.0
COL.COLO4_13978 Corchorus olitorius HOM05D002762 ORTHO05D004643 8.3e-06 55.1 92 30.4


User provided reference genes

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