Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g144920 Amaranthus hybridus HOM05D007198 ORTHO05D008969 4.5e-55 217.6 106 100.0
AUR62001938 Chenopodium quinoa HOM05D000362 ORTHO05D008969 1.1e-29 133.3 83 78.3
AUR62003873 Chenopodium quinoa HOM05D007198 ORTHO05D008969 2.8e-28 128.6 83 74.7
EL10Ac6g15754 Beta vulgaris HOM05D007198 ORTHO05D008969 3.4e-26 121.7 83 71.1
Nn1g04876 Nelumbo nucifera HOM05D007198 ORTHO05D008969 6.4e-25 117.5 84 69.0
Manes.12G101406 Manihot esculenta HOM05D007198 ORTHO05D008969 4.1e-24 114.8 83 68.7
Hund16328 Selenicereus undatus HOM05D007198 ORTHO05D008969 7.0e-24 114.0 87 69.0
TWI09G1591 Tripterygium wilfordii HOM05D007198 ORTHO05D008969 7.0e-24 114.0 82 70.7
COL.COLO4_11404 Corchorus olitorius HOM05D007198 ORTHO05D008969 3.5e-23 111.7 85 67.1
QL06p041746 Quercus lobata HOM05D007198 ORTHO05D008969 4.6e-23 111.3 83 66.3
Sc16g0004690 Simmondsia chinensis HOM05D007198 ORTHO05D008969 4.6e-23 111.3 83 67.5
Eucgr.H01658 Eucalyptus grandis HOM05D007198 ORTHO05D008969 1.3e-22 109.8 84 66.7
Thecc.01G054900 Theobroma cacao HOM05D007198 ORTHO05D008969 3.0e-22 108.6 85 63.5
FvH4_1g15950 Fragaria vesca HOM05D007198 ORTHO05D008969 8.6e-22 107.1 83 65.1
FAN19G3022 Fragaria x ananassa HOM05D007198 ORTHO05D008969 8.6e-22 107.1 83 65.1
Gohir.D12G068800 Gossypium hirsutum HOM05D007198 ORTHO05D008969 1.5e-21 106.3 85 63.5
Gorai.008G075300 Gossypium raimondii HOM05D007198 ORTHO05D008969 1.5e-21 106.3 85 63.5
Aqoxy6G01332 Aquilegia oxysepala HOM05D007198 ORTHO05D008969 2.5e-21 105.5 83 65.1
CiPaw.01G018700 Carya illinoinensis HOM05D007198 ORTHO05D008969 2.5e-21 105.5 81 63.0
RcHm_v2.0_Chr2g0105351 Rosa chinensis HOM05D007198 ORTHO05D008969 3.3e-21 105.1 83 62.7
FAN23G1494 Fragaria x ananassa HOM05D007198 ORTHO05D008969 5.6e-21 104.4 83 63.9
Gohir.A12G069000 Gossypium hirsutum HOM05D007198 ORTHO05D008969 5.6e-21 104.4 85 63.5
AL7G13790 Arabidopsis lyrata HOM05D007198 ORTHO05D008969 1.2e-20 103.2 81 61.7
Haze_15409 Corylus avellana HOM05D007198 ORTHO05D008969 1.2e-20 103.2 83 62.7
Ciclev10026429m.g Citrus clementina HOM05D007198 ORTHO05D008969 2.8e-20 102.1 85 64.7
PGR102G0107 Punica granatum HOM05D007198 ORTHO05D008969 2.8e-20 102.1 84 59.5
CDE04G0918 Ceratophyllum demersum HOM05D007198 ORTHO05D008969 3.6e-20 101.7 84 63.1
Dinv39859 Davidia involucrata HOM05D007198 ORTHO05D008969 6.2e-20 100.9 83 61.4
Sed0013660 Sechium edule HOM05D007198 ORTHO05D008969 6.2e-20 100.9 83 60.2
TAR628G0194 Trochodendron aralioides HOM05D007198 ORTHO05D008969 6.2e-20 100.9 92 57.6
CSS0000534 Camellia sinensis var. sinensis HOM05D007198 ORTHO05D008969 8.1e-20 100.5 83 61.4
CSS0048673 Camellia sinensis var. sinensis HOM05D007198 ORTHO05D008969 8.1e-20 100.5 83 61.4
CsaV3_6G043210 Cucumis sativus L. HOM05D007198 ORTHO05D008969 8.1e-20 100.5 83 62.7
MD02G1301600 Malus domestica HOM05D007198 ORTHO05D008969 1.4e-19 99.8 84 60.7
Prupe.7G134300 Prunus persica HOM05D007198 ORTHO05D008969 1.4e-19 99.8 83 56.6
AT4G37020 Arabidopsis thaliana HOM05D007198 ORTHO05D008969 2.3e-19 99.0 81 61.7
Hma1.2p1_0461F.1_g157845 Hydrangea macrophylla HOM05D007198 ORTHO05D008969 3.1e-19 98.6 83 60.2
Aa31LG6G13950 Aethionema arabicum HOM05D007198 ORTHO05D008969 4.0e-19 98.2 81 60.5
CANSAT01G0326 Cannabis sativa HOM05D007198 ORTHO05D008969 4.0e-19 98.2 85 63.5
TPR.G21270 Trifolium pratense HOM05D007198 ORTHO05D008969 4.0e-19 98.2 85 57.6
MSTRG.2886 Avicennia marina HOM05D007198 ORTHO05D008969 5.2e-19 97.8 82 63.4
Migut.H00436 Erythranthe guttata HOM05D007198 ORTHO05D008969 6.8e-19 97.4 82 62.2
ClCG01G016780 Citrullus lanatus HOM05D007198 ORTHO05D008969 8.9e-19 97.1 83 60.2
Actinidia16498 Actinidia chinensis HOM05D007198 ORTHO05D008969 3.4e-18 95.1 83 57.8
vmacro17948 Vaccinium macrocarpon HOM05D007198 ORTHO05D008969 3.4e-18 95.1 84 57.1
GSVIVG01022140001 Vitis vinifera HOM05D007198 ORTHO05D008969 4.4e-18 94.7 83 60.2
BcaB03g12356 Brassica carinata HOM05D007198 ORTHO05D008969 5.8e-18 94.4 81 55.6
Carub.0007s0322 Capsella rubella HOM05D007198 ORTHO05D008969 5.8e-18 94.4 76 61.8
Thhalv10026229m.g Eutrema salsugineum HOM05D007198 ORTHO05D008969 5.8e-18 94.4 81 59.3
arahy.Tifrunner.gnm1.ann1.VZ1EEZ Arachis hypogaea HOM05D007198 ORTHO05D008969 7.5e-18 94.0 83 56.6
PSO210G2416 Papaver somniferum HOM05D007198 ORTHO05D008969 9.8e-18 93.6 65 66.2
arahy.Tifrunner.gnm1.ann1.ETA9G6 Arachis hypogaea HOM05D007198 ORTHO05D008969 1.3e-17 93.2 83 55.4
MD02G1301800 Malus domestica HOM05D007198 ORTHO05D008969 1.3e-17 93.2 84 58.3
Medtr5g017490 Medicago truncatula HOM05D007198 ORTHO05D008969 1.3e-17 93.2 82 54.9
Sp7g34740 Schrenkiella parvula HOM05D007198 ORTHO05D008969 1.3e-17 93.2 77 61.0
CARHR245490 Cardamine hirsuta HOM05D007198 ORTHO05D008969 1.7e-17 92.8 74 59.5
HanXRQChr07g0191591 Helianthus annuus HOM05D007198 ORTHO05D008969 2.2e-17 92.4 81 56.8
Cc07_g05960 Coffea canephora HOM05D007198 ORTHO05D008969 2.9e-17 92.0 85 54.1
Atru.BG.94.p Acer truncatum HOM05D007198 ORTHO05D008969 3.7e-17 91.7 60 71.7
BcaC01g00428 Brassica carinata HOM05D007198 ORTHO05D008969 6.4e-17 90.9 81 55.6
C03p79670 Brassica napus HOM05D001349 ORTHO05D008727 6.4e-17 90.9 81 55.6
Ca_24774_v3 Cicer arietinum L. HOM05D007198 ORTHO05D008969 1.4e-16 89.7 82 51.2
PSO170G6483 Papaver somniferum HOM05D007198 ORTHO05D008969 1.4e-16 89.7 65 61.5
SGA_v2.0_scaffold15G07292 Striga asiatica HOM05D007198 ORTHO05D008969 1.4e-16 89.7 83 59.0
Rhsim08G0101100 Rhododendron simsii HOM05D007198 ORTHO05D008969 1.9e-16 89.4 71 59.2
DCAR_010899 Daucus carota HOM05D007198 ORTHO05D008969 2.4e-16 89.0 85 54.1
Lsat_1_v5_gn_4_166740 Lactuca sativa HOM05D007198 ORTHO05D008969 3.2e-16 88.6 81 54.3
ECA232G0395 Erigeron canadensis HOM05D007198 ORTHO05D008969 4.1e-16 88.2 76 57.9
BraA08t34210Z Brassica rapa HOM05D007198 ORTHO05D008969 5.4e-16 87.8 62 66.1
Glyma.01G185700 Glycine max HOM05D007198 ORTHO05D008969 5.4e-16 87.8 83 51.8
A08p22530 Brassica napus HOM05D001349 ORTHO05D008727 9.2e-16 87.0 80 58.8
Lj2g0004070 Lotus japonicus HOM05D007198 ORTHO05D008969 9.2e-16 87.0 81 53.1
VMungo1215G1587 Vigna mungo HOM05D007198 ORTHO05D008969 1.6e-15 86.3 83 48.2
CAN.G836.78 Capsicum annuum HOM05D007198 ORTHO05D008969 6.0e-15 84.3 83 50.6
Potri.007G043200 Populus trichocarpa HOM05D007198 ORTHO05D008969 7.8e-15 84.0 81 56.8
ATR0753G086 Amborella trichopoda HOM05D007198 ORTHO05D008969 1.3e-14 83.2 78 52.6
Lalb_Chr09g0323151 Lupinus albus HOM05D007198 ORTHO05D008969 1.3e-14 83.2 86 51.2
Os10g0388900 Oryza sativa ssp. japonica HOM05D007198 ORTHO05D008969 1.7e-14 82.8 81 54.3
Duzib264G0904 Durio zibethinus HOM05D007198 ORTHO05D008969 2.3e-14 82.4 69 60.9
Phvul.002G019200 Phaseolus vulgaris HOM05D007198 ORTHO05D008969 3.9e-14 81.6 63 54.0
Nitab4.5_0001034g0170 Nicotiana tabacum HOM05D007198 ORTHO05D008969 8.6e-14 80.5 81 50.6
BolC3t20215H Brassica oleracea HOM05D007198 ORTHO05D008969 1.5e-13 79.7 85 51.8
Sabra07G0038100 Salix brachista HOM05D007198 ORTHO05D008969 1.5e-13 79.7 84 53.6
Nitab4.5_0002016g0040 Nicotiana tabacum HOM05D007198 ORTHO05D008969 3.3e-13 78.6 81 49.4
Zm00001eb223810 Zea mays HOM05D007198 ORTHO05D008969 1.2e-12 76.6 61 59.0
Solyc02g090750.4 Solanum lycopersicum HOM05D007198 ORTHO05D008969 2.1e-12 75.9 86 41.9
Sopen02g035380 Solanum pennellii HOM05D007198 ORTHO05D008969 2.1e-12 75.9 77 50.6
Peaxi162Scf00450g00621 Petunia axillaris HOM05D007198 ORTHO05D008969 2.8e-12 75.5 83 45.8
Mapoly0001s0095 Marchantia polymorpha HOM05D007198 ORTHO05D008969 8.9e-11 70.5 79 45.6
MBI02_g02990_MAGBIO Magnolia biondii HOM05D007198 ORTHO05D008969 1.2e-10 70.1 45 68.9
SMO146G0205 Selaginella moellendorffii HOM05D007198 ORTHO05D008969 1.2e-10 70.1 59 52.5
Pp3c12_24960 Physcomitrium patens HOM05D007198 ORTHO05D008969 9.9e-10 67.0 75 45.3
RcHm_v2.0_Chr3g0472951 Rosa chinensis HOM05D007198 ORTHO05D008969 6.4e-09 64.3 47 63.8
Psat2g167000 Pisum sativum HOM05D007198 ORTHO05D008969 7.1e-08 60.8 47 59.6
Glyma.11G056400 Glycine max HOM05D007198 ORTHO05D008969 1.2e-07 60.1 69 46.4
MD07G1022300 Malus domestica HOM05D007198 ORTHO05D008969 2.1e-07 59.3 55 52.7


User provided reference genes

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