Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 0.0e+00 2409.0 1213 100.0
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 0.0e+00 1286.9 1220 57.8
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 0.0e+00 1175.2 1233 53.4
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 0.0e+00 1112.8 1174 54.0
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 3.7e-286 988.8 1264 46.8
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 4.0e-216 756.1 1284 39.5
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 9.0e-208 728.4 1283 38.3
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 5.9e-207 725.7 1303 38.1
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 4.3e-202 709.5 1321 37.0
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 1.3e-201 708.0 1305 37.0
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 4.8e-201 706.1 1309 37.2
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 6.9e-200 702.2 1316 36.7
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 1.5e-199 701.0 1308 38.2
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 3.4e-199 699.9 1301 36.6
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 5.9e-199 699.1 1301 36.5
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 7.7e-199 698.7 1320 35.8
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 3.8e-198 696.4 1254 36.7
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 1.9e-197 694.1 1304 37.2
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 3.2e-197 693.3 1311 36.8
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 2.1e-196 690.6 1235 37.2
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 3.6e-196 689.9 1312 36.4
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 5.1e-195 686.0 1312 36.7
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 2.5e-194 683.7 1312 36.4
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 7.4e-194 682.2 1302 37.3
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 1.7e-193 681.0 1415 34.1
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 2.2e-193 680.6 1308 35.2
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 6.3e-193 679.1 1299 36.0
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 5.3e-192 676.0 1330 35.5
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 1.5e-191 674.5 1217 36.6
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 1.1e-189 668.3 1313 35.4
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 1.9e-189 667.5 1312 35.2
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.9e-189 667.5 1312 36.5
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 8.8e-187 658.7 1199 36.9
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 3.3e-186 656.8 1299 36.5
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 6.3e-185 652.5 1070 39.3
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 2.9e-182 643.7 1344 35.0
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 6.5e-182 642.5 1247 35.3
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 4.2e-181 639.8 1243 36.2
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.2e-180 638.3 1299 35.9
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.4e-179 634.8 1298 34.1
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.5e-178 631.3 1271 34.6
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 7.5e-178 629.0 1261 35.6
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 1.3e-177 628.2 1189 35.9
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 7.0e-176 622.5 1208 35.3
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 9.1e-176 622.1 1299 34.6
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.6e-175 621.3 1182 36.4
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 2.2e-174 617.5 1163 36.3
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 2.2e-174 617.5 1313 34.3
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 2.9e-174 617.1 1265 34.9
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 5.0e-174 616.3 1300 34.5
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 1.2e-172 611.7 1239 36.2
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 3.0e-171 607.1 1317 33.6
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.2e-170 605.1 1261 34.6
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.6e-170 604.0 1279 33.8
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 5.7e-170 602.8 1181 35.1
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 6.3e-169 599.4 1272 33.6
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 6.3e-169 599.4 1317 33.7
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 2.0e-167 594.3 1306 34.0
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 5.0e-166 589.7 1289 33.6
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 1.2e-164 585.1 1270 33.2
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 3.6e-164 583.6 1169 34.5
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 3.6e-164 583.6 1190 34.0
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 6.1e-164 582.8 1168 34.2
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 5.2e-163 579.7 1260 34.0
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 3.4e-162 577.0 1291 32.5
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 5.7e-162 576.2 1268 35.0
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 9.8e-162 575.5 1279 32.9
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 4.9e-161 573.2 1302 33.4
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 6.3e-161 572.8 1286 32.3
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 2.4e-160 570.9 1324 32.8
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 5.4e-160 569.7 1209 35.1
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 3.5e-159 567.0 1278 33.8
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 5.0e-158 563.1 1293 32.1
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 1.5e-157 561.6 1322 32.5
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 5.2e-155 553.1 1230 32.7
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 6.8e-155 552.7 1320 33.6
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 2.0e-154 551.2 1255 34.0
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 1.7e-153 548.1 1148 34.4
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 3.7e-153 547.0 1233 33.2
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 1.2e-151 542.0 1286 32.7
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 3.5e-151 540.4 1233 32.8
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.6e-146 524.2 1086 34.4
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 8.1e-140 502.7 1002 33.7
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 1.5e-133 481.9 1029 33.2
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 5.8e-130 469.9 1163 31.2
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 8.4e-129 466.1 1292 30.3
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 2.3e-126 458.0 1056 32.6
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.5e-122 445.3 1075 31.6
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 7.1e-120 436.4 1072 32.3
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 3.6e-116 424.1 1092 31.7
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 3.8e-113 414.1 699 40.9
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.9e-104 385.2 693 39.0
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 2.0e-98 365.2 644 39.3
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 9.3e-88 329.7 709 36.4
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 4.3e-85 320.9 568 34.2
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 8.2e-84 316.6 577 35.0
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.5e-82 312.4 719 32.1
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 2.9e-81 308.1 705 33.2
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 7.2e-80 303.5 758 30.7
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.2e-79 302.8 827 28.9
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.1e-77 296.2 629 33.7
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 5.7e-77 293.9 620 37.3
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.5e-74 285.8 709 33.4
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.3e-73 282.7 537 36.1
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.7e-68 265.8 842 26.4
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 1.1e-64 253.1 329 40.1
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 7.5e-61 240.4 288 47.9
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 3.8e-57 228.0 667 30.9
Ah.03g144300 Amaranthus hybridus HOM05D001096 ORTHO05D006357 2.5e-56 225.3 127 85.0
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 4.2e-56 224.6 267 47.9
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 5.7e-53 214.2 361 37.4
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.8e-51 209.1 611 31.1
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.6e-50 206.1 1021 25.1
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.7e-50 205.3 436 30.0
Ah.07g201650 Amaranthus hybridus HOM05D000058 ORTHO05D000077 2.0e-34 152.5 91 79.1
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 4.3e-24 118.2 494 28.5
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 5.6e-24 117.9 474 28.5
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 1.3e-17 96.7 257 26.5
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.5e-16 93.2 374 25.7
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 2.1e-15 89.4 371 25.1
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 2.4e-14 85.9 422 27.3
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 3.1e-14 85.5 409 29.3
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 5.2e-14 84.7 142 35.2
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 6.4e-12 77.8 170 31.2
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 3.2e-11 75.5 411 26.3
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 5.4e-11 74.7 411 26.3
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 1.6e-10 73.2 408 25.7
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 1.6e-10 73.2 408 25.7
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 7.8e-10 70.9 373 27.1
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 6.6e-09 67.8 196 29.1
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 3.3e-08 65.5 324 22.2
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 1.2e-07 63.5 115 40.0
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.2e-07 63.5 120 29.2
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 3.6e-07 62.0 458 22.9
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 6.9e-06 57.8 397 21.9


User provided reference genes

Program Settings