Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g142940 Amaranthus hybridus HOM05D000095 ORTHO05D015271 3.6e-55 218.0 109 100.0
EL10Ac6g15034 Beta vulgaris HOM05D000095 ORTHO05D026473 3.3e-24 115.2 73 72.6
EL10Ac6g15033 Beta vulgaris HOM05D000095 ORTHO05D015271 2.3e-22 109.0 67 77.6
AUR62018177 Chenopodium quinoa HOM05D000095 ORTHO05D015271 1.7e-17 92.8 64 60.9
AUR62038662 Chenopodium quinoa HOM05D000095 ORTHO05D015271 2.1e-15 85.9 64 57.8
AUR62003726 Chenopodium quinoa HOM05D000095 ORTHO05D015271 1.0e-14 83.6 65 60.0
AUR62038445 Chenopodium quinoa HOM05D000095 ORTHO05D015271 1.8e-14 82.8 64 53.1
Rhsim10G0191800 Rhododendron simsii HOM05D000095 ORTHO05D015271 1.8e-14 82.8 58 63.8
Ah.01g013930 Amaranthus hybridus HOM05D000095 ORTHO05D015271 6.8e-14 80.9 63 57.1
AUR62002754 Chenopodium quinoa HOM05D000095 ORTHO05D015271 6.8e-14 80.9 64 51.6
Actinidia35689 Actinidia chinensis HOM05D000095 ORTHO05D012712 1.2e-13 80.1 92 43.5
EL10Ac2g03110 Beta vulgaris HOM05D000095 ORTHO05D015271 2.6e-13 79.0 63 54.0
Ah.01g014690 Amaranthus hybridus HOM05D000095 ORTHO05D015271 4.4e-13 78.2 63 55.6
Dinv40210 Davidia involucrata HOM05D000095 ORTHO05D000330 1.7e-12 76.3 57 54.4
AUR62038444 Chenopodium quinoa HOM05D000095 ORTHO05D015271 2.2e-12 75.9 64 50.0
Prupe.7G186200 Prunus persica HOM05D000095 ORTHO05D000330 1.9e-11 72.8 67 49.3
QL06p053308 Quercus lobata HOM05D000095 ORTHO05D000330 2.4e-11 72.4 110 37.3
TWI09G1401 Tripterygium wilfordii HOM05D000095 ORTHO05D000330 2.4e-11 72.4 56 58.9
Atru.chr3.47 Acer truncatum HOM05D000095 ORTHO05D000330 4.1e-11 71.6 92 41.3
TAR381G1257 Trochodendron aralioides HOM05D000095 ORTHO05D000330 4.1e-11 71.6 57 52.6
vmacro18473 Vaccinium macrocarpon HOM05D000095 ORTHO05D012712 1.2e-10 70.1 58 48.3
vmacro20611 Vaccinium macrocarpon HOM05D000095 ORTHO05D000330 1.6e-10 69.7 58 55.2
Rhsim08G0026400 Rhododendron simsii HOM05D000095 ORTHO05D000330 4.6e-10 68.2 101 34.7
GSVIVG01022310001 Vitis vinifera HOM05D000095 ORTHO05D000330 4.6e-10 68.2 59 50.8
Nn4g24235 Nelumbo nucifera HOM05D000095 ORTHO05D000330 1.0e-09 67.0 58 46.6
Cc07_g12090 Coffea canephora HOM05D000095 ORTHO05D000330 1.7e-09 66.2 55 52.7
SalBow5G0412 Salvia bowleyana HOM05D000095 ORTHO05D000330 2.3e-09 65.9 59 45.8
Dinv28302 Davidia involucrata HOM05D000095 ORTHO05D012712 3.9e-09 65.1 58 50.0
FvH4_1g10080 Fragaria vesca HOM05D000095 ORTHO05D000330 6.6e-09 64.3 58 50.0
FAN23G1132 Fragaria x ananassa HOM05D000095 ORTHO05D000330 6.6e-09 64.3 58 50.0
Actinidia32994 Actinidia chinensis HOM05D000095 ORTHO05D000330 8.6e-09 63.9 56 48.2
Migut.L00854 Erythranthe guttata HOM05D000095 ORTHO05D012712 8.6e-09 63.9 58 46.6
RcHm_v2.0_Chr2g0096871 Rosa chinensis HOM05D000095 ORTHO05D000330 1.1e-08 63.5 57 47.4
FAN19G2914 Fragaria x ananassa HOM05D000095 ORTHO05D000330 1.5e-08 63.2 58 50.0
FAN28G0928 Fragaria x ananassa HOM05D000095 ORTHO05D000330 1.5e-08 63.2 58 48.3
Atru.chr3.46 Acer truncatum HOM05D000095 ORTHO05D000330 1.9e-08 62.8 55 45.5
ATR0807G129 Amborella trichopoda HOM05D000095 ORTHO05D000534 1.9e-08 62.8 57 49.1
Oeu045744.1 Olea europaea HOM05D000095 ORTHO05D012712 1.9e-08 62.8 56 48.2
FAN23G2915 Fragaria x ananassa HOM05D000095 ORTHO05D000330 9.5e-08 60.5 58 48.3
FAN26G3092 Fragaria x ananassa HOM05D000095 ORTHO05D000330 9.5e-08 60.5 58 48.3
SGA_v2.0_scaffold132G34574 Striga asiatica HOM05D000095 ORTHO05D000330 9.5e-08 60.5 59 42.4
CANSAT78G1782 Cannabis sativa HOM05D000095 ORTHO05D000330 1.6e-07 59.7 76 39.5
MBI08_g23114_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000330 1.6e-07 59.7 58 46.6
Oeu043397.1 Olea europaea HOM05D000095 ORTHO05D012712 2.1e-07 59.3 57 43.9
Oeu043398.1 Olea europaea HOM05D000095 ORTHO05D012712 2.1e-07 59.3 57 43.9
Potri.007G064600 Populus trichocarpa HOM05D000095 ORTHO05D000330 2.1e-07 59.3 58 44.8
Ah.03g142950 Amaranthus hybridus HOM05D000095 ORTHO05D026473 2.8e-07 58.9 72 38.9
Migut.H01739 Erythranthe guttata HOM05D000095 ORTHO05D000534 6.2e-07 57.8 66 40.9
MBI18_g38879_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000534 6.2e-07 57.8 57 42.1
Cc07_g18210 Coffea canephora HOM05D000095 ORTHO05D000330 8.0e-07 57.4 56 46.4
HPP92_018037 Vanilla planifolia HOM05D000095 ORTHO05D000330 8.0e-07 57.4 72 38.9
Zm00001eb367300 Zea mays HOM05D000095 ORTHO05D000330 8.0e-07 57.4 56 44.6
Lalb_Chr09g0335111 Lupinus albus HOM05D000095 ORTHO05D000330 1.1e-06 57.0 57 43.9
Medtr3g111880 Medicago truncatula HOM05D000095 ORTHO05D000534 1.4e-06 56.6 56 42.9
Aqoxy5G03030 Aquilegia oxysepala HOM05D000095 ORTHO05D077559 1.8e-06 56.2 111 33.3
TPR.G12354 Trifolium pratense HOM05D000095 ORTHO05D000534 1.8e-06 56.2 56 44.6
TAR623G0499 Trochodendron aralioides HOM05D000095 ORTHO05D000330 1.8e-06 56.2 57 42.1
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 1.8e-06 56.2 117 33.3
Lalb_Chr17g0338351 Lupinus albus HOM05D000095 ORTHO05D000330 2.3e-06 55.8 76 32.9
Medtr8g063870 Medicago truncatula HOM05D000095 ORTHO05D000330 2.3e-06 55.8 84 35.7
CBR_g34447 Chara braunii HOM05D000095 ORTHO05D000330 3.1e-06 55.5 74 37.8
Cc02_g09550 Coffea canephora HOM05D000095 ORTHO05D000330 3.1e-06 55.5 59 42.4
Psat5g017040 Pisum sativum HOM05D000095 ORTHO05D000534 3.1e-06 55.5 56 41.1
arahy.Tifrunner.gnm1.ann1.EXG4FA Arachis hypogaea HOM05D000095 ORTHO05D000330 4.0e-06 55.1 73 34.2
Lalb_Chr22g0354741 Lupinus albus HOM05D000095 ORTHO05D000534 4.0e-06 55.1 56 41.1
Prupe.2G114800 Prunus persica HOM05D000095 ORTHO05D000534 4.0e-06 55.1 57 49.1
unitig_22.g5619 Utricularia gibba HOM05D000095 ORTHO05D000330 4.0e-06 55.1 75 37.3
VMungo0647G0240 Vigna mungo HOM05D000095 ORTHO05D000534 4.0e-06 55.1 105 29.5
Eucgr.I02206 Eucalyptus grandis HOM05D000095 ORTHO05D000330 5.2e-06 54.7 64 40.6
Glyma.14G074500 Glycine max HOM05D000095 ORTHO05D000534 5.2e-06 54.7 80 36.2
Lalb_Chr24g0398951 Lupinus albus HOM05D000095 ORTHO05D000534 5.2e-06 54.7 56 39.3
MBI06_g27481_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000330 5.2e-06 54.7 82 31.7
ATR0317G101 Amborella trichopoda HOM05D000095 ORTHO05D000330 6.8e-06 54.3 57 38.6
Eucgr.I02207 Eucalyptus grandis HOM05D000095 ORTHO05D000330 6.8e-06 54.3 62 43.5
Lalb_Chr10g0095501 Lupinus albus HOM05D000095 ORTHO05D000330 6.8e-06 54.3 57 38.6
Sed0006231 Sechium edule HOM05D000095 ORTHO05D000330 6.8e-06 54.3 56 41.1
THA.LOC104821359 Tarenaya hassleriana HOM05D000095 ORTHO05D000330 6.8e-06 54.3 63 42.9
Aqoxy6G01557 Aquilegia oxysepala HOM05D000095 ORTHO05D078784 8.9e-06 53.9 91 35.2
ECA236G2836 Erigeron canadensis HOM05D000095 ORTHO05D000534 8.9e-06 53.9 56 41.1
Lsat_1_v5_gn_4_118620 Lactuca sativa HOM05D000095 ORTHO05D000534 8.9e-06 53.9 57 42.1
Phvul.004G002400 Phaseolus vulgaris HOM05D000095 ORTHO05D000534 8.9e-06 53.9 70 38.6
SalBow1G7512 Salvia bowleyana HOM05D000095 ORTHO05D357456 8.9e-06 53.9 57 43.9
Sc15g0006960 Simmondsia chinensis HOM05D000095 ORTHO05D000534 8.9e-06 53.9 56 39.3


User provided reference genes

Program Settings