Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.6e-190 669.5 381 100.0
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 2.1e-118 429.9 385 71.4
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 1.8e-114 416.8 387 68.5
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.2e-97 360.9 385 57.1
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 8.8e-93 344.7 265 72.5
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.9e-72 276.6 388 49.5
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.1e-71 274.6 391 52.4
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 9.5e-71 271.6 390 46.4
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 9.5e-71 271.6 390 46.4
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 8.0e-70 268.5 401 48.4
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 3.1e-69 266.5 387 47.8
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.8e-68 262.3 389 48.3
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 5.8e-68 262.3 383 49.9
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 2.9e-67 260.0 387 48.1
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 2.9e-67 260.0 389 49.1
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.1e-66 258.1 382 47.9
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.9e-66 257.3 384 46.9
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.9e-66 257.3 384 46.9
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 7.0e-66 255.4 389 48.6
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.2e-65 254.6 386 45.1
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.2e-65 254.6 387 48.1
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 2.0e-65 253.8 394 47.0
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.7e-65 253.4 394 50.5
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 3.5e-65 253.1 396 49.0
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.0e-64 251.5 383 47.3
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.0e-64 251.5 384 43.2
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.3e-64 250.4 382 47.9
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 2.3e-64 250.4 388 49.0
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 3.9e-64 249.6 387 49.1
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 6.6e-64 248.8 387 48.6
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 8.6e-64 248.4 395 47.8
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 4.3e-63 246.1 399 49.6
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 7.3e-63 245.4 395 47.1
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 3.6e-62 243.0 382 48.4
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.7e-62 242.7 388 44.3
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 6.2e-62 242.3 386 45.9
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 6.2e-62 242.3 389 49.1
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.1e-61 241.5 389 49.1
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.1e-61 241.5 392 47.2
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.4e-61 241.1 389 49.1
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 1.4e-61 241.1 389 49.4
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 2.6e-60 236.9 385 44.4
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 3.4e-60 236.5 390 44.4
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 5.8e-60 235.7 397 48.4
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 7.5e-60 235.3 389 49.6
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 9.8e-60 235.0 394 49.7
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 2.2e-59 233.8 393 46.6
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.9e-59 233.4 387 49.1
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 2.9e-59 233.4 388 47.7
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 2.9e-59 233.4 403 46.2
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 6.4e-59 232.3 404 48.5
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.9e-58 230.7 392 43.6
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 2.4e-58 230.3 408 45.3
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 3.2e-58 229.9 399 48.1
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 7.1e-58 228.8 380 42.9
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.6e-57 227.6 400 43.0
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.7e-57 226.9 391 43.5
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 3.0e-56 223.4 387 48.1
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 3.0e-56 223.4 389 45.2
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 3.9e-56 223.0 392 45.4
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 5.1e-56 222.6 362 42.5
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.1e-55 221.5 390 45.4
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 2.5e-55 220.3 384 43.2
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 5.6e-55 219.2 398 41.5
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 9.5e-55 218.4 380 43.2
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 6.2e-54 215.7 402 43.0
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 2.3e-53 213.8 358 48.0
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 6.8e-53 212.2 396 47.5
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 6.8e-53 212.2 404 42.8
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 8.9e-53 211.8 335 51.6
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 8.9e-53 211.8 402 42.3
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 2.6e-52 210.3 408 42.6
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 3.4e-52 209.9 398 42.7
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.1e-50 204.9 403 45.9
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 1.9e-50 204.1 402 43.3
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.9e-50 204.1 393 46.6
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.4e-50 203.8 395 46.3
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 5.4e-50 202.6 361 46.5
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 9.2e-50 201.8 393 43.8
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.6e-49 201.1 364 47.8
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 4.6e-49 199.5 403 41.9
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 9.6e-47 191.8 409 39.6
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 9.6e-47 191.8 386 43.0
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 6.2e-46 189.1 394 41.4
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.8e-44 182.6 385 41.3
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 8.4e-43 178.7 390 43.1
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.1e-42 178.3 335 47.5
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.9e-42 177.6 390 39.5
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.9e-42 177.6 390 39.5
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 3.2e-42 176.8 386 39.4
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 3.2e-42 176.8 386 39.4
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.2e-42 176.4 335 48.1
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.2e-42 176.4 335 47.2
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 7.1e-42 175.6 396 41.4
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.2e-41 174.9 324 40.4
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 7.8e-41 172.2 385 39.7
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 3.0e-40 170.2 387 39.5
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 2.5e-39 167.2 383 39.4
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 4.3e-39 166.4 336 44.6
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 9.6e-39 165.2 326 47.9
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 1.3e-38 164.9 324 39.5
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 1.6e-38 164.5 329 45.6
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 3.1e-37 160.2 384 38.8
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 9.0e-37 158.7 382 38.2
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.2e-36 158.3 404 38.4
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 1.5e-36 157.9 393 36.1
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 3.4e-36 156.8 388 36.6
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 5.8e-36 156.0 389 36.2
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 9.9e-36 155.2 384 38.3
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.3e-35 154.8 324 43.8
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.7e-35 154.5 388 35.3
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 4.9e-35 152.9 325 41.8
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 4.9e-35 152.9 384 38.3
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 1.4e-34 151.4 350 40.0
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.2e-33 148.3 348 41.1
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.6e-33 147.9 387 42.1
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.1e-33 147.5 391 36.8
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 3.9e-32 143.3 389 36.5
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.9e-31 141.0 389 36.5
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 4.3e-31 139.8 324 38.9
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 9.0e-29 132.1 383 34.2
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.0e-28 131.0 386 35.0
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.3e-27 128.3 375 35.5
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.1e-25 120.9 387 34.6
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 2.7e-25 120.6 298 40.9
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 7.9e-25 119.0 322 40.1
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.8e-24 117.9 386 34.2
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 3.9e-24 116.7 386 34.7
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.1e-24 116.3 160 55.0
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.1e-23 115.2 325 39.4
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 5.6e-23 112.8 320 35.9
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.6e-22 111.3 195 40.5
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 2.1e-22 110.9 200 48.5
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 8.1e-22 109.0 324 37.3
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.8e-21 107.8 318 38.1
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 1.8e-21 107.8 215 43.3
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 2.4e-21 107.5 326 37.1
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 4.0e-21 106.7 327 33.3
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 4.0e-21 106.7 383 29.5
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 2.0e-20 104.4 318 34.9
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 3.4e-20 103.6 318 34.9
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.3e-19 101.7 165 47.9
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 2.5e-18 97.4 327 32.1
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 2.5e-18 97.4 327 32.1
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 7.1e-18 95.9 373 34.3
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 6.7e-16 89.4 302 33.8
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 2.5e-15 87.4 305 37.0
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 4.1e-13 80.1 304 36.2
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 4.1e-13 80.1 301 29.9
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.9e-11 73.9 386 31.6
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 1.6e-09 68.2 211 40.8
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 4.6e-09 66.6 318 29.9
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.3e-08 65.1 319 29.5
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 2.5e-07 60.8 208 38.5
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 2.5e-07 60.8 208 38.5
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.8e-06 57.4 140 44.3
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 3.7e-06 57.0 315 32.1


User provided reference genes

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