Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 9.2e-159 563.5 291 100.0
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 2.7e-65 253.1 275 54.9
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 6.6e-64 248.4 281 55.5
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.4e-61 240.7 282 53.5
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 3.2e-58 229.6 263 55.1
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.5e-28 131.0 257 39.7
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 8.1e-22 108.6 346 31.5
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 1.3e-19 101.3 278 34.5
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 2.9e-19 100.1 278 34.9
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 1.1e-18 98.2 280 33.9
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 4.6e-17 92.8 273 32.6
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.6e-17 92.8 264 31.4
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 3.0e-16 90.1 295 32.5
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 3.9e-16 89.7 284 31.3
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 6.7e-16 89.0 267 31.1
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 6.7e-16 89.0 278 32.0
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 8.7e-16 88.6 293 31.7
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 8.7e-16 88.6 270 31.1
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 3.3e-15 86.7 267 33.0
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 4.3e-15 86.3 291 32.6
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 5.6e-15 85.9 293 30.4
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 3.7e-14 83.2 280 30.7
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 3.7e-14 83.2 275 31.6
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 8.1e-14 82.0 273 31.1
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 8.1e-14 82.0 278 29.9
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.4e-13 80.5 264 30.7
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 3.1e-13 80.1 297 29.6
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 5.3e-13 79.3 266 31.6
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 5.3e-13 79.3 293 30.0
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 6.9e-13 79.0 286 28.7
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 6.9e-13 79.0 286 28.7
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 9.0e-13 78.6 266 32.0
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 7.6e-12 75.5 276 34.1
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.3e-11 74.7 271 27.7
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 2.2e-11 73.9 106 38.7
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 3.8e-11 73.2 235 31.1
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 6.5e-11 72.4 106 38.7
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 6.5e-11 72.4 318 29.2
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 6.5e-11 72.4 289 29.1
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 1.1e-10 71.6 302 27.8
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.1e-10 71.6 291 29.6
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.9e-10 70.9 148 37.2
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 2.5e-10 70.5 277 27.1
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.5e-10 70.5 288 29.2
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.2e-10 70.1 291 28.2
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 4.2e-10 69.7 291 28.9
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 4.2e-10 69.7 264 28.8
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.5e-10 69.3 288 29.9
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 5.5e-10 69.3 84 42.9
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 5.5e-10 69.3 264 29.9
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 5.5e-10 69.3 264 29.2
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 9.3e-10 68.6 275 30.2
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 3.5e-09 66.6 64 50.0
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.0e-08 65.1 287 27.9
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 2.3e-08 63.9 270 30.0
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 3.0e-08 63.5 273 27.8
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 3.0e-08 63.5 84 46.4
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.0e-08 63.5 270 25.9
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 3.9e-08 63.2 77 39.0
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 3.9e-08 63.2 77 39.0
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 3.9e-08 63.2 77 39.0
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 3.9e-08 63.2 77 39.0
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 5.1e-08 62.8 109 41.3
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 8.7e-08 62.0 260 29.2
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 1.1e-07 61.6 104 30.8
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.1e-07 61.6 285 28.1
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 1.5e-07 61.2 126 34.9
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 1.5e-07 61.2 126 34.9
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 1.5e-07 61.2 126 34.9
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.5e-07 61.2 260 28.8
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.5e-07 61.2 281 27.4
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 1.5e-07 61.2 264 28.8
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.9e-07 60.8 273 26.7
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 1.9e-07 60.8 111 36.0
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.9e-07 60.8 111 36.0
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 3.3e-07 60.1 81 44.4
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 3.3e-07 60.1 117 35.9
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 4.3e-07 59.7 55 50.9
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.7e-07 59.3 260 28.5
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 7.4e-07 58.9 305 28.5
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 9.6e-07 58.5 93 37.6
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 9.6e-07 58.5 117 34.2
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 9.6e-07 58.5 291 27.8
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.3e-06 58.2 126 33.3
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.3e-06 58.2 126 34.1
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.3e-06 58.2 59 57.6
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.3e-06 58.2 55 54.5
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.6e-06 57.8 53 52.8
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 1.6e-06 57.8 117 35.9
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 2.1e-06 57.4 312 26.9
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 2.1e-06 57.4 297 29.6
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 3.7e-06 56.6 183 30.6
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 3.7e-06 56.6 118 34.7
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 3.7e-06 56.6 286 26.6
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.7e-06 56.6 159 32.1
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 4.8e-06 56.2 89 37.1
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 6.2e-06 55.8 109 35.8
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 6.2e-06 55.8 129 31.0
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 6.2e-06 55.8 133 30.1
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 8.2e-06 55.5 125 39.2
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 8.2e-06 55.5 125 39.2


User provided reference genes

Program Settings