Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g141710 Amaranthus hybridus HOM05D006985 ORTHO05D008749 2.0e-107 392.5 204 100.0
EL10Ac6g14751 Beta vulgaris HOM05D006985 ORTHO05D008749 8.1e-77 290.8 200 77.0
AUR62016276 Chenopodium quinoa HOM05D006985 ORTHO05D008749 2.9e-74 282.3 201 78.1
AUR62003309 Chenopodium quinoa HOM05D006985 ORTHO05D008749 1.2e-72 276.9 204 76.0
Hund03540 Selenicereus undatus HOM05D006985 ORTHO05D008749 3.8e-66 255.4 205 69.8
TAR625G1052 Trochodendron aralioides HOM05D006985 ORTHO05D008749 2.2e-50 203.0 208 59.6
Manes.12G142400 Manihot esculenta HOM05D006985 ORTHO05D008749 1.2e-48 197.2 212 57.1
Cc07_g16120 Coffea canephora HOM05D006985 ORTHO05D008749 3.5e-48 195.7 176 61.4
Sc16g0004160 Simmondsia chinensis HOM05D006985 ORTHO05D008749 6.0e-48 194.9 197 59.4
Oeu028373.1 Olea europaea HOM05D006985 ORTHO05D008749 1.0e-47 194.1 204 55.4
Sabra05G0069300 Salix brachista HOM05D006985 ORTHO05D008749 1.3e-47 193.7 187 56.7
Nn5g28916 Nelumbo nucifera HOM05D006985 ORTHO05D008749 1.8e-47 193.4 205 54.6
ClCG01G016160 Citrullus lanatus HOM05D006985 ORTHO05D008749 2.3e-47 193.0 208 55.3
Oeu030683.1 Olea europaea HOM05D006985 ORTHO05D008749 3.0e-47 192.6 206 53.4
Cfa002750 Carpinus fangiana HOM05D006985 ORTHO05D008749 3.9e-47 192.2 213 52.6
Duzib147G0418 Durio zibethinus HOM05D006985 ORTHO05D008749 3.9e-47 192.2 212 53.8
Actinidia28892 Actinidia chinensis HOM05D006985 ORTHO05D008749 6.7e-47 191.4 196 58.2
GSVIVG01022222001 Vitis vinifera HOM05D006985 ORTHO05D008749 8.7e-47 191.0 190 56.8
Haze_25036 Corylus avellana HOM05D006985 ORTHO05D008749 1.5e-46 190.3 213 52.6
TWI53G2009 Tripterygium wilfordii HOM05D006985 ORTHO05D008749 1.5e-46 190.3 213 53.5
CiPaw.04G092100 Carya illinoinensis HOM05D006985 ORTHO05D008749 2.5e-46 189.5 185 57.3
Glyma.05G183500 Glycine max HOM05D006985 ORTHO05D008749 3.3e-46 189.1 212 51.9
Potri.005G084200 Populus trichocarpa HOM05D006985 ORTHO05D008749 3.3e-46 189.1 211 52.1
CSS0005033 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 4.3e-46 188.7 203 57.6
Thecc.01G112400 Theobroma cacao HOM05D006985 ORTHO05D008749 5.7e-46 188.3 212 53.8
THA.LOC104804144 Tarenaya hassleriana HOM05D006985 ORTHO05D008749 7.4e-46 188.0 213 53.5
QL06p032211 Quercus lobata HOM05D006985 ORTHO05D008749 9.6e-46 187.6 217 53.5
Glyma.08G141300 Glycine max HOM05D006985 ORTHO05D008749 1.6e-45 186.8 213 52.6
Atru.chr4.358 Acer truncatum HOM05D006985 ORTHO05D008749 3.7e-45 185.7 215 53.0
CSS0027796 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 3.7e-45 185.7 202 55.9
Gohir.A02G134801 Gossypium hirsutum HOM05D006985 ORTHO05D008749 4.8e-45 185.3 211 52.6
COL.COLO4_11016 Corchorus olitorius HOM05D006985 ORTHO05D008749 6.3e-45 184.9 210 53.3
Gohir.D03G045800 Gossypium hirsutum HOM05D006985 ORTHO05D008749 1.1e-44 184.1 211 52.6
Gorai.003G047000 Gossypium raimondii HOM05D006985 ORTHO05D008749 1.1e-44 184.1 211 52.6
MELO3C007486.2 Cucumis melo HOM05D006985 ORTHO05D008749 1.8e-44 183.3 191 56.0
Rhsim10G0013600 Rhododendron simsii HOM05D006985 ORTHO05D008749 1.8e-44 183.3 207 55.1
SGA_v2.0_scaffold51G18747 Striga asiatica HOM05D006985 ORTHO05D008749 2.4e-44 183.0 199 50.3
Hma1.2p1_0375F.1_g138690 Hydrangea macrophylla HOM05D006985 ORTHO05D008749 3.1e-44 182.6 174 54.0
CANSAT01G0007 Cannabis sativa HOM05D006985 ORTHO05D008749 5.3e-44 181.8 214 50.5
CAN.G276.1 Capsicum annuum HOM05D006985 ORTHO05D008749 6.9e-44 181.4 187 57.2
CsaV3_6G042430 Cucumis sativus L. HOM05D006985 ORTHO05D008749 6.9e-44 181.4 192 55.7
Rhsim08G0006600 Rhododendron simsii HOM05D006985 ORTHO05D008749 6.9e-44 181.4 206 54.9
Rhsim08G0007300 Rhododendron simsii HOM05D006985 ORTHO05D008749 6.9e-44 181.4 207 53.6
arahy.Tifrunner.gnm1.ann1.7DG6XK Arachis hypogaea HOM05D006985 ORTHO05D008749 9.0e-44 181.0 200 53.5
arahy.Tifrunner.gnm1.ann1.MHK3H7 Arachis hypogaea HOM05D006985 ORTHO05D008749 9.0e-44 181.0 200 53.5
VMungo0251G1437 Vigna mungo HOM05D006985 ORTHO05D008749 9.0e-44 181.0 210 52.9
A09p57880 Brassica napus HOM05D006985 ORTHO05D008749 1.2e-43 180.6 194 51.5
C08p41110 Brassica napus HOM05D006985 ORTHO05D008749 1.2e-43 180.6 194 51.5
BolC8t51677H Brassica oleracea HOM05D006985 ORTHO05D008749 1.2e-43 180.6 194 51.5
BraA09t41180Z Brassica rapa HOM05D006985 ORTHO05D008749 1.2e-43 180.6 194 51.5
Lalb_Chr13g0296201 Lupinus albus HOM05D006985 ORTHO05D008749 1.2e-43 180.6 207 52.7
Sopen04g023520 Solanum pennellii HOM05D006985 ORTHO05D008749 1.2e-43 180.6 170 59.4
AL4G11290 Arabidopsis lyrata HOM05D006985 ORTHO05D008749 2.0e-43 179.9 213 50.7
Sp4g01050 Schrenkiella parvula HOM05D006985 ORTHO05D008749 2.0e-43 179.9 194 51.5
BcaB08g35014 Brassica carinata HOM05D006985 ORTHO05D008749 2.6e-43 179.5 194 52.6
Phvul.002G264600 Phaseolus vulgaris HOM05D006985 ORTHO05D008749 3.4e-43 179.1 210 52.4
AT2G21970 Arabidopsis thaliana HOM05D006985 ORTHO05D008749 4.5e-43 178.7 197 51.8
Dinv42695 Davidia involucrata HOM05D006985 ORTHO05D008749 4.5e-43 178.7 194 56.2
MBI02_g45734_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 4.5e-43 178.7 206 51.0
Solyc04g053130.4 Solanum lycopersicum HOM05D006985 ORTHO05D008749 4.5e-43 178.7 170 58.8
BcaC07g41109 Brassica carinata HOM05D006985 ORTHO05D008749 1.0e-42 177.6 194 51.0
Lj2A564T40 Lonicera japonica HOM05D006985 ORTHO05D008749 1.0e-42 177.6 187 55.6
Sed0020932 Sechium edule HOM05D006985 ORTHO05D008749 1.0e-42 177.6 187 53.5
Ca_17697_v3 Cicer arietinum L. HOM05D006985 ORTHO05D008749 1.3e-42 177.2 211 50.7
PGR004G1495 Punica granatum HOM05D006985 ORTHO05D008749 1.3e-42 177.2 223 51.1
PSO210G1005 Papaver somniferum HOM05D006985 ORTHO05D008749 1.7e-42 176.8 198 50.0
Aa31LG7G14690 Aethionema arabicum HOM05D006985 ORTHO05D008749 2.9e-42 176.0 207 49.8
DCAR_010078 Daucus carota HOM05D006985 ORTHO05D008749 8.5e-42 174.5 188 54.3
Nitab4.5_0000471g0030 Nicotiana tabacum HOM05D006985 ORTHO05D008749 8.5e-42 174.5 207 53.1
Peaxi162Scf00323g00052 Petunia axillaris HOM05D006985 ORTHO05D008749 8.5e-42 174.5 205 52.7
PGSC0003DMG400016590 Solanum tuberosum HOM05D006985 ORTHO05D008749 1.1e-41 174.1 201 53.2
MSTRG.23313 Avicennia marina HOM05D006985 ORTHO05D008749 1.4e-41 173.7 203 49.3
Duzib187G0142 Durio zibethinus HOM05D006985 ORTHO05D008749 1.4e-41 173.7 212 52.4
MD15G1333400 Malus domestica HOM05D006985 ORTHO05D008749 1.4e-41 173.7 206 50.5
Psat7g051440 Pisum sativum HOM05D006985 ORTHO05D008749 1.4e-41 173.7 203 53.7
MBI02_g20708_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 1.9e-41 173.3 184 53.3
Eucgr.I00326 Eucalyptus grandis HOM05D006985 ORTHO05D008749 2.5e-41 172.9 219 51.1
Ciclev10026526m.g Citrus clementina HOM05D006985 ORTHO05D008749 3.2e-41 172.6 167 58.7
ECA238G4202 Erigeron canadensis HOM05D006985 ORTHO05D008749 3.2e-41 172.6 173 56.1
Zm00001eb431840 Zea mays HOM05D006985 ORTHO05D008749 3.2e-41 172.6 199 49.2
Lsat_1_v5_gn_2_67381 Lactuca sativa HOM05D006985 ORTHO05D008749 4.2e-41 172.2 167 58.1
Cpa.g.sc196.10 Carica papaya HOM05D006985 ORTHO05D008749 5.5e-41 171.8 196 50.5
Thhalv10000325m.g Eutrema salsugineum HOM05D006985 ORTHO05D008749 7.2e-41 171.4 194 50.0
HanXRQChr14g0446291 Helianthus annuus HOM05D006985 ORTHO05D008749 7.2e-41 171.4 173 54.9
SalBow6G7167 Salvia bowleyana HOM05D006985 ORTHO05D008749 9.3e-41 171.0 203 51.7
Carub.0004s0111 Capsella rubella HOM05D006985 ORTHO05D008749 1.2e-40 170.6 194 50.5
Hund19658 Selenicereus undatus HOM05D006985 ORTHO05D008749 1.2e-40 170.6 231 49.4
Lj4g0016816 Lotus japonicus HOM05D006985 ORTHO05D008749 4.6e-40 168.7 183 53.0
vmacro18630 Vaccinium macrocarpon HOM05D006985 ORTHO05D008749 4.6e-40 168.7 220 47.7
Prupe.6G173300 Prunus persica HOM05D006985 ORTHO05D008749 1.3e-39 167.2 215 49.3
Aqoxy5G01954 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 1.8e-39 166.8 197 48.7
MSTRG.3810 Avicennia marina HOM05D006985 ORTHO05D008749 1.8e-39 166.8 168 53.0
FAN23G1894 Fragaria x ananassa HOM05D006985 ORTHO05D008749 3.0e-39 166.0 211 50.7
Aqoxy7G01607 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 1.5e-38 163.7 197 47.2
FvH4_1g22220 Fragaria vesca HOM05D006985 ORTHO05D008749 1.5e-38 163.7 207 49.8
RcHm_v2.0_Chr2g0116361 Rosa chinensis HOM05D006985 ORTHO05D008749 3.3e-38 162.5 211 49.8
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.6e-37 160.2 123 64.2
Migut.H02428 Erythranthe guttata HOM05D006985 ORTHO05D008749 1.6e-37 160.2 205 48.8
Os04g0639200 Oryza sativa ssp. japonica HOM05D006985 ORTHO05D008749 1.8e-36 156.8 205 46.8
CDE02G4368 Ceratophyllum demersum HOM05D006985 ORTHO05D008749 6.9e-36 154.8 195 44.6
HPP92_013077 Vanilla planifolia HOM05D006985 ORTHO05D008749 7.2e-33 144.8 168 45.8
ATR0564G194 Amborella trichopoda HOM05D006985 ORTHO05D008749 5.1e-31 138.7 170 45.3
PSO170G0586 Papaver somniferum HOM05D006985 ORTHO05D008749 5.3e-28 128.6 154 48.7
SEGI_00004 Sequoiadendron giganteum HOM05D006985 ORTHO05D008749 2.6e-27 126.3 175 40.6
CARHR113060 Cardamine hirsuta HOM05D006985 ORTHO05D008749 4.4e-22 109.0 90 57.8
SMO174G0105 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 9.4e-17 91.3 158 32.9
AagrBONN_evm.TU.Sc2ySwM_362.2621 Anthoceros agrestis HOM05D006985 ORTHO05D008749 2.3e-15 86.7 175 33.7
SMO356G0636 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 1.2e-14 84.3 157 31.8
Mapoly0007s0046 Marchantia polymorpha HOM05D006985 ORTHO05D008749 4.4e-14 82.4 174 31.6
CARHR113050 Cardamine hirsuta HOM05D006985 ORTHO05D008749 1.8e-12 77.0 115 44.3
CBR_g770 Chara braunii HOM05D006985 ORTHO05D008749 3.5e-11 72.8 160 36.9
Pp3c27_3810 Physcomitrium patens HOM05D006985 ORTHO05D008749 7.7e-11 71.6 105 39.0
CDE08G1171 Ceratophyllum demersum HOM05D000290 ORTHO05D009072 2.2e-10 70.1 95 42.1
Pp3c16_13700 Physcomitrium patens HOM05D006985 ORTHO05D008749 2.9e-10 69.7 129 34.9
FAN26G1540 Fragaria x ananassa HOM05D000436 ORTHO05D000678 1.5e-09 67.4 123 45.5
unitig_88.g27736 Utricularia gibba HOM05D006985 ORTHO05D008749 1.8e-07 60.5 96 39.6


User provided reference genes

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