Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.3e-120 435.6 229 100.0
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 1.2e-100 370.2 223 85.7
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 8.4e-99 364.0 225 84.9
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 4.3e-95 351.7 221 80.5
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.6e-94 349.7 223 79.4
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 2.4e-93 345.9 223 80.3
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 1.2e-92 343.6 215 82.8
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.6e-92 342.4 223 78.5
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 5.9e-92 341.3 223 78.0
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.3e-91 340.1 224 78.6
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 5.0e-91 338.2 223 76.7
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 5.0e-91 338.2 217 80.2
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 6.5e-91 337.8 223 77.1
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.4e-90 336.7 223 78.5
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 1.4e-90 336.7 224 76.3
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.4e-90 336.7 223 77.6
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 1.9e-90 336.3 224 77.2
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 2.5e-90 335.9 223 79.4
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 4.2e-90 335.1 225 78.2
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.6e-89 333.2 223 78.0
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 7.9e-89 330.9 225 76.0
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.4e-88 330.1 224 76.3
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 1.8e-88 329.7 223 76.7
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.3e-88 329.3 224 75.9
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 2.3e-88 329.3 223 75.3
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 1.1e-87 327.0 224 77.2
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.5e-87 326.6 223 77.1
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 2.5e-87 325.9 223 74.9
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 2.5e-87 325.9 223 75.8
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.5e-87 325.9 223 74.9
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 3.3e-87 325.5 223 74.4
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 4.3e-87 325.1 223 75.3
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.7e-87 324.7 223 74.9
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 5.7e-87 324.7 223 77.1
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 7.4e-87 324.3 224 74.6
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 7.4e-87 324.3 223 76.2
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 9.7e-87 323.9 226 75.7
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 9.7e-87 323.9 223 75.3
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 1.7e-86 323.2 223 75.8
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 2.2e-86 322.8 223 74.9
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 2.2e-86 322.8 223 76.2
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 3.7e-86 322.0 223 75.8
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 4.8e-86 321.6 226 76.1
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 4.8e-86 321.6 223 75.8
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 6.3e-86 321.2 223 74.0
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 1.8e-85 319.7 224 74.1
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 2.4e-85 319.3 223 74.0
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 1.2e-84 317.0 223 73.5
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.6e-84 315.8 178 93.3
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 2.6e-84 315.8 219 74.0
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 3.4e-84 315.5 223 73.5
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 4.5e-84 315.1 221 74.7
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.9e-84 314.7 224 74.1
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.3e-83 313.5 223 71.7
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.7e-83 313.2 223 70.0
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.9e-83 312.4 224 74.6
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 5.0e-83 311.6 223 71.3
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 6.5e-83 311.2 226 73.0
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 8.5e-83 310.8 220 72.3
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 1.4e-82 310.1 224 72.8
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 2.5e-82 309.3 206 77.2
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 3.2e-82 308.9 226 73.0
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 7.2e-82 307.8 223 69.5
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 9.4e-82 307.4 223 71.3
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.7e-81 305.1 223 72.6
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 6.1e-81 304.7 224 71.0
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 6.1e-81 304.7 223 69.1
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 7.9e-81 304.3 224 71.4
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 7.9e-81 304.3 221 72.4
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 7.9e-81 304.3 224 70.5
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 1.4e-80 303.5 227 71.4
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.4e-80 303.5 221 72.9
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 6.7e-80 301.2 223 70.9
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.1e-79 300.4 223 68.6
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 2.0e-79 299.7 223 68.6
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.3e-78 297.0 223 68.6
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 1.7e-78 296.6 252 62.7
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.8e-78 295.8 223 69.1
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 3.7e-78 295.4 223 68.2
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 8.2e-78 294.3 223 68.2
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 1.1e-77 293.9 223 67.7
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 1.4e-77 293.5 223 67.7
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.4e-77 293.5 223 67.3
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.8e-77 293.1 223 68.2
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.8e-77 293.1 223 68.2
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 2.4e-77 292.7 223 66.8
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 3.1e-77 292.4 223 67.3
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.5e-76 290.0 225 68.9
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 2.0e-76 289.7 210 70.0
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 2.0e-76 289.7 225 69.8
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 2.6e-76 289.3 223 66.8
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 2.6e-76 289.3 223 66.8
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 3.5e-76 288.9 224 67.0
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 4.5e-76 288.5 223 66.8
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 4.5e-76 288.5 263 62.0
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 1.0e-75 287.3 226 68.1
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 1.3e-75 287.0 224 66.5
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 1.3e-75 287.0 224 66.5
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 2.2e-75 286.2 230 66.1
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 3.8e-75 285.4 226 65.9
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 8.5e-75 284.3 226 66.4
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 1.1e-74 283.9 225 68.4
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.1e-74 283.9 179 82.7
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.1e-74 283.9 226 67.7
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.4e-74 283.5 178 82.6
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 1.9e-74 283.1 227 69.6
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 3.2e-74 282.3 226 66.4
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 7.2e-74 281.2 178 81.5
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 1.2e-73 280.4 226 64.6
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 1.6e-73 280.0 272 56.6
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 2.1e-73 279.6 178 80.3
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.4e-72 276.9 181 79.6
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.2e-72 275.0 181 79.0
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.2e-72 275.0 181 78.5
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 5.2e-72 275.0 179 77.1
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 8.8e-72 274.2 181 78.5
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 5.7e-71 271.6 225 64.0
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 7.4e-71 271.2 178 80.9
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 7.4e-71 271.2 225 63.6
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 7.4e-71 271.2 225 64.0
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 1.3e-70 270.4 178 78.1
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 1.1e-69 267.3 180 75.0
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.4e-69 266.9 269 56.9
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.8e-69 266.5 220 63.6
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 9.1e-69 264.2 240 61.2
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 1.7e-67 260.0 218 63.3
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.7e-67 260.0 240 60.8
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 3.8e-67 258.8 179 74.9
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 2.5e-66 256.1 176 74.4
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 3.2e-66 255.8 199 66.8
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 4.4e-63 245.4 178 69.7
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 8.0e-57 224.6 223 57.0
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 3.7e-54 215.7 135 80.0
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 5.9e-52 208.4 170 62.9
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.4e-48 197.2 178 62.4
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 1.9e-42 176.8 137 67.9
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 1.2e-41 174.1 137 66.4
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 2.1e-41 173.3 130 65.4
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.9e-38 162.9 167 54.5
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 2.6e-31 139.8 131 58.8
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 2.6e-31 139.8 226 43.4
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.4e-31 139.4 189 48.7
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 5.4e-29 132.1 177 40.1
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 9.2e-29 131.3 94 71.3
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 2.1e-28 130.2 185 37.8
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 3.1e-24 116.3 188 34.6
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 5.2e-24 115.5 99 60.6
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.2e-23 114.4 236 38.1
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 2.2e-22 110.2 177 36.2
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 4.9e-22 109.0 192 33.3
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 4.6e-20 102.4 77 64.9
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.5e-18 96.7 177 42.4
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 5.8e-15 85.5 65 67.7
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 4.0e-08 62.8 38 71.1
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 2.6e-07 60.1 45 71.1
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.7e-06 57.4 43 69.8
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 8.4e-06 55.1 91 42.9


User provided reference genes

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