Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 1.4e-145 519.6 261 100.0
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 1.2e-104 383.6 257 77.4
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 8.2e-90 334.3 253 66.0
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 8.2e-90 334.3 237 71.7
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 2.4e-89 332.8 192 83.9
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 3.1e-89 332.4 270 66.7
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 1.2e-88 330.5 235 68.9
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.5e-88 330.1 246 69.1
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 2.0e-88 329.7 250 66.8
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 4.5e-88 328.6 239 68.6
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 4.5e-88 328.6 238 70.6
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 2.2e-87 326.2 240 67.5
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 2.9e-87 325.9 243 68.3
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 5.0e-87 325.1 248 65.7
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 6.5e-87 324.7 241 68.0
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 6.5e-87 324.7 241 68.5
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.4e-86 323.6 247 66.8
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 1.9e-86 323.2 232 71.6
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 2.5e-86 322.8 246 65.9
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.2e-86 322.4 241 67.6
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 4.2e-86 322.0 257 65.0
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 4.2e-86 322.0 249 64.7
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 4.2e-86 322.0 240 65.8
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 5.5e-86 321.6 250 66.8
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.2e-85 320.5 258 64.7
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 2.1e-85 319.7 250 64.0
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 2.7e-85 319.3 240 65.4
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 4.6e-85 318.5 238 66.8
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 4.6e-85 318.5 237 66.2
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 6.1e-85 318.2 239 65.7
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 7.9e-85 317.8 240 65.4
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 1.0e-84 317.4 262 63.7
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 2.3e-84 316.2 228 68.0
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 6.7e-84 314.7 264 63.6
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 8.7e-84 314.3 247 67.6
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 8.7e-84 314.3 251 64.1
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 8.7e-84 314.3 214 70.6
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 1.5e-83 313.5 247 67.2
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 1.9e-83 313.2 216 69.0
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.9e-83 313.2 219 70.3
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 2.5e-83 312.8 241 66.0
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 4.3e-83 312.0 256 62.9
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.4e-83 311.2 239 66.1
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 7.4e-83 311.2 225 68.0
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 7.4e-83 311.2 225 69.8
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 9.7e-83 310.8 239 66.5
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 9.7e-83 310.8 251 63.7
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.3e-82 310.5 251 63.3
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 1.6e-82 310.1 220 67.3
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 3.7e-82 308.9 184 77.7
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 1.4e-81 307.0 243 65.0
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 1.8e-81 306.6 237 65.8
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 2.4e-81 306.2 257 61.5
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 3.1e-81 305.8 212 68.9
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 6.9e-81 304.7 251 64.9
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 6.9e-81 304.7 239 64.9
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.9e-81 304.7 239 64.9
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 9.0e-81 304.3 250 63.6
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 1.2e-80 303.9 246 65.9
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 1.2e-80 303.9 245 62.4
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 2.0e-80 303.1 251 62.2
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 2.0e-80 303.1 258 61.6
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 2.6e-80 302.8 269 61.0
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 2.6e-80 302.8 199 71.4
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 3.4e-80 302.4 256 62.1
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 3.4e-80 302.4 272 57.0
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.5e-80 302.0 242 66.9
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 7.7e-80 301.2 242 62.8
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 1.0e-79 300.8 259 61.4
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.0e-79 300.8 255 60.8
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.0e-79 300.8 239 67.8
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 1.0e-79 300.8 230 68.7
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.0e-79 300.8 260 60.8
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.3e-79 300.4 242 65.7
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 2.9e-79 299.3 238 66.0
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 2.9e-79 299.3 251 63.7
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 6.5e-79 298.1 231 64.5
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 6.5e-79 298.1 194 73.7
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 8.5e-79 297.7 255 62.0
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.1e-78 297.4 251 61.8
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 1.1e-78 297.4 258 59.7
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 1.4e-78 297.0 257 59.9
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 1.4e-78 297.0 245 61.6
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 5.5e-78 295.0 255 60.8
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 7.2e-78 294.7 264 58.7
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 7.2e-78 294.7 264 58.7
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 9.4e-78 294.3 258 60.1
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 9.4e-78 294.3 204 68.1
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 2.7e-77 292.7 238 61.8
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 1.0e-76 290.8 255 59.6
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 1.4e-76 290.4 248 62.5
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.4e-76 290.4 260 58.1
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 1.8e-76 290.0 255 59.6
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 1.1e-75 287.3 244 62.3
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 2.5e-75 286.2 201 67.7
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 3.3e-75 285.8 263 57.4
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 5.7e-75 285.0 259 60.2
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.7e-75 285.0 227 63.9
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 4.8e-74 282.0 184 70.7
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 5.3e-73 278.5 247 58.7
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 1.2e-72 277.3 176 75.0
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.4e-72 275.8 186 69.4
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 5.0e-71 271.9 156 80.8
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 8.5e-71 271.2 185 68.6
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 1.1e-70 270.8 244 57.8
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 1.1e-70 270.8 192 66.7
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.2e-69 267.3 203 65.5
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 2.7e-69 266.2 192 64.6
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 3.6e-69 265.8 258 57.8
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.1e-68 261.9 159 76.1
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 8.8e-68 261.2 164 73.2
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 3.3e-67 259.2 252 55.2
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 9.7e-67 257.7 239 58.2
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 8.2e-66 254.6 158 72.8
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.0e-64 250.0 163 73.0
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 2.2e-63 246.5 230 54.3
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 1.1e-62 244.2 238 52.9
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 3.2e-62 242.7 185 62.7
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 4.8e-58 228.8 136 79.4
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 2.7e-56 223.0 245 45.3
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 3.2e-54 216.1 218 55.0
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 1.7e-50 203.8 178 53.9
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 2.2e-50 203.4 131 68.7
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.2e-46 189.1 102 81.4
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 7.2e-46 188.3 179 54.7
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.8e-44 183.7 150 62.0
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 1.8e-44 183.7 102 79.4
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 9.5e-38 161.4 107 65.4
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.9e-34 149.1 191 42.9
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.8e-29 133.3 100 64.0
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.7e-26 124.0 120 57.5
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 2.4e-25 120.2 93 65.6
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 9.2e-25 118.2 96 63.5
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 6.6e-23 112.1 160 39.4
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 4.3e-22 109.4 69 76.8
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 4.7e-21 105.9 197 34.5
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 1.8e-20 104.0 190 35.3
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 3.1e-20 103.2 189 35.4
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 5.2e-20 102.4 195 31.8
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 6.8e-20 102.1 232 31.5
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 8.9e-20 101.7 176 39.8
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 1.5e-19 100.9 228 34.2
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 2.0e-19 100.5 253 32.4
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 2.0e-19 100.5 185 34.6
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 2.0e-19 100.5 195 32.3
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 3.4e-19 99.8 254 31.9
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 3.4e-19 99.8 186 33.3
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 3.4e-19 99.8 248 31.9
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 4.4e-19 99.4 194 33.0
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 1.3e-18 97.8 194 32.5
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 1.7e-18 97.4 187 33.7
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 2.9e-18 96.7 187 32.6
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 3.7e-18 96.3 187 32.1
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 4.9e-18 95.9 188 32.4
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 6.4e-18 95.5 255 29.0
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 1.4e-17 94.4 191 32.5
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 1.4e-17 94.4 206 31.1
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 1.9e-17 94.0 228 31.6
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 2.4e-17 93.6 223 31.8
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 7.1e-17 92.0 264 30.7
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 1.6e-16 90.9 133 40.6
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 3.0e-15 86.7 69 58.0
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 3.0e-15 86.7 176 33.5
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 2.8e-13 80.1 164 33.5
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 4.7e-13 79.3 164 32.3
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 1.8e-12 77.4 166 36.1
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.8e-12 77.4 85 51.8
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 4.4e-11 72.8 130 33.8
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 7.6e-11 72.0 206 30.6
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 9.9e-11 71.6 131 33.6
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.2e-08 64.7 104 45.2
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 2.1e-08 63.9 111 36.0
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.5e-08 63.2 106 40.6
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 4.6e-08 62.8 155 29.0
Oeu013340.1 Olea europaea HOM05D004917 ORTHO05D005954 7.8e-08 62.0 86 44.2
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.0e-07 60.1 65 49.2
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 5.1e-07 59.3 197 29.4
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.1e-06 58.2 110 35.5
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 1.5e-06 57.8 84 39.3


User provided reference genes

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