Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g140070 Amaranthus hybridus HOM05D006387 ORTHO05D008533 1.6e-21 105.1 53 100.0
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 3.7e-13 77.4 52 71.2
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 3.1e-12 74.3 43 81.4
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 5.3e-12 73.6 55 65.5
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 1.2e-11 72.4 50 72.0
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 7.6e-11 69.7 52 67.3
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 2.2e-10 68.2 53 69.8
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 4.9e-10 67.0 53 67.9
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 4.9e-10 67.0 53 67.9
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 6.4e-10 66.6 49 67.3
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 1.1e-09 65.9 52 63.5
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 1.1e-09 65.9 53 69.8
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 1.1e-09 65.9 50 68.0
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.4e-09 65.5 50 68.0
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.4e-09 65.5 50 68.0
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 1.4e-09 65.5 50 68.0
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 1.9e-09 65.1 53 64.2
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 1.9e-09 65.1 53 64.2
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 4.2e-09 63.9 53 60.4
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 5.5e-09 63.5 53 60.4
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 5.5e-09 63.5 52 65.4
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 7.1e-09 63.2 53 58.5
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 7.1e-09 63.2 53 64.2
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 1.2e-08 62.4 50 66.0
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 1.2e-08 62.4 40 72.5
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 1.6e-08 62.0 40 77.5
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 1.6e-08 62.0 40 77.5
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 2.1e-08 61.6 40 70.0
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 2.1e-08 61.6 40 72.5
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 2.1e-08 61.6 53 58.5
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 2.1e-08 61.6 53 58.5
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 2.1e-08 61.6 41 73.2
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 2.1e-08 61.6 53 54.7
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 2.7e-08 61.2 49 61.2
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 2.7e-08 61.2 53 62.3
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 2.7e-08 61.2 51 66.7
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 2.7e-08 61.2 52 57.7
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 2.7e-08 61.2 40 72.5
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 3.5e-08 60.8 41 73.2
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 3.5e-08 60.8 41 73.2
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 3.5e-08 60.8 54 59.3
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 4.6e-08 60.5 52 57.7
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 4.6e-08 60.5 51 64.7
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 6.0e-08 60.1 41 68.3
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 7.9e-08 59.7 51 62.7
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 7.9e-08 59.7 41 70.7
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 7.9e-08 59.7 41 70.7
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 7.9e-08 59.7 41 70.7
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 7.9e-08 59.7 40 77.5
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 7.9e-08 59.7 40 72.5
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 1.0e-07 59.3 50 58.0
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 1.0e-07 59.3 53 58.5
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 1.0e-07 59.3 50 66.0
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 1.3e-07 58.9 50 64.0
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.8e-07 58.5 41 68.3
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 1.8e-07 58.5 51 62.7
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 2.3e-07 58.2 40 70.0
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 2.3e-07 58.2 41 70.7
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 2.3e-07 58.2 39 69.2
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 3.0e-07 57.8 42 69.0
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 3.0e-07 57.8 40 75.0
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 3.0e-07 57.8 40 75.0
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 3.9e-07 57.4 40 67.5
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 3.9e-07 57.4 40 67.5
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 3.9e-07 57.4 39 69.2
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 3.9e-07 57.4 51 60.8
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 5.1e-07 57.0 41 70.7
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 5.1e-07 57.0 52 55.8
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 6.7e-07 56.6 52 59.6
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 6.7e-07 56.6 49 57.1
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 8.7e-07 56.2 54 57.4
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 1.9e-06 55.1 57 57.9
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 1.9e-06 55.1 49 61.2
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 1.9e-06 55.1 41 68.3
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 1.9e-06 55.1 49 61.2
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 1.9e-06 55.1 49 61.2
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 1.9e-06 55.1 49 61.2
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 1.9e-06 55.1 49 61.2
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 1.9e-06 55.1 50 56.0
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 2.5e-06 54.7 49 61.2
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 2.5e-06 54.7 49 55.1
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 3.3e-06 54.3 53 54.7
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 4.3e-06 53.9 53 58.5
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 4.3e-06 53.9 38 68.4
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 4.3e-06 53.9 39 66.7
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 5.6e-06 53.5 39 61.5
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 5.6e-06 53.5 39 69.2
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 7.4e-06 53.1 39 69.2
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 9.6e-06 52.8 38 68.4
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 9.6e-06 52.8 40 60.0
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 9.6e-06 52.8 50 56.0
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 9.6e-06 52.8 50 56.0


User provided reference genes

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