Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 1.7e-87 325.9 155 100.0
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 2.4e-33 146.0 98 72.4
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 4.8e-29 131.7 77 79.2
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 3.4e-27 125.6 78 75.6
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 4.5e-27 125.2 77 77.9
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 5.8e-27 124.8 77 77.9
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.2e-24 117.1 85 65.9
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 5.3e-20 101.7 88 63.6
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.1e-17 94.0 77 61.0
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.5e-17 92.8 75 58.7
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 4.2e-17 92.0 71 63.4
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 4.2e-17 92.0 75 58.7
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.1e-17 91.3 79 59.5
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.2e-16 90.5 74 62.2
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.6e-16 90.1 67 65.7
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 1.6e-16 90.1 75 57.3
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 3.5e-16 89.0 75 54.7
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 3.5e-16 89.0 74 63.5
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 4.6e-16 88.6 75 53.3
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 6.1e-16 88.2 77 62.3
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.0e-15 87.4 79 59.5
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.0e-15 87.4 79 59.5
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.8e-15 86.7 75 57.3
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 2.3e-15 86.3 78 59.0
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.3e-15 86.3 69 63.8
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.0e-15 85.9 77 59.7
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 3.0e-15 85.9 67 65.7
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.0e-15 85.9 78 61.5
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 3.0e-15 85.9 78 61.5
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 3.0e-15 85.9 75 56.0
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.9e-15 85.5 75 56.0
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.9e-15 85.5 75 56.0
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.9e-15 85.5 75 56.0
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 3.9e-15 85.5 67 65.7
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.9e-15 85.5 75 56.0
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.9e-15 85.5 75 56.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 5.1e-15 85.1 76 55.3
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 5.1e-15 85.1 75 56.0
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 5.1e-15 85.1 77 57.1
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 6.7e-15 84.7 81 54.3
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 8.7e-15 84.3 77 55.8
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 8.7e-15 84.3 75 61.3
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 8.7e-15 84.3 77 55.8
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.1e-14 84.0 77 57.1
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.1e-14 84.0 87 56.3
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 1.1e-14 84.0 67 64.2
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 1.5e-14 83.6 77 62.3
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.5e-14 83.6 77 62.3
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.5e-14 83.6 77 62.3
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.5e-14 83.6 85 51.8
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 1.5e-14 83.6 67 62.7
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.5e-14 83.6 87 57.5
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 1.5e-14 83.6 80 61.2
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.9e-14 83.2 75 56.0
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.9e-14 83.2 78 60.3
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.5e-14 82.8 77 62.3
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 2.5e-14 82.8 76 55.3
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 2.5e-14 82.8 86 55.8
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 2.5e-14 82.8 77 58.4
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.3e-14 82.0 80 55.0
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 4.3e-14 82.0 77 58.4
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 4.3e-14 82.0 76 57.9
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 4.3e-14 82.0 70 61.4
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 4.3e-14 82.0 71 60.6
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 4.3e-14 82.0 71 57.7
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 5.7e-14 81.6 70 60.0
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.7e-14 81.6 77 61.0
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 5.7e-14 81.6 77 57.1
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 9.7e-14 80.9 77 54.5
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 9.7e-14 80.9 69 56.5
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 9.7e-14 80.9 76 57.9
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 9.7e-14 80.9 75 53.3
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.3e-13 80.5 75 54.7
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.3e-13 80.5 75 58.7
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.6e-13 80.1 67 59.7
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.6e-13 80.1 80 57.5
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.6e-13 80.1 77 57.1
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 2.2e-13 79.7 68 61.8
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 2.2e-13 79.7 75 57.3
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.8e-13 79.3 77 55.8
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.8e-13 79.3 76 53.9
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 2.8e-13 79.3 81 61.7
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.8e-13 79.3 79 57.0
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.8e-13 79.3 76 52.6
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 3.7e-13 79.0 76 55.3
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 3.7e-13 79.0 77 53.2
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 6.3e-13 78.2 67 58.2
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 8.2e-13 77.8 82 52.4
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 8.2e-13 77.8 77 50.6
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.1e-12 77.4 78 57.7
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.1e-12 77.4 66 56.1
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.4e-12 77.0 58 67.2
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.4e-12 77.0 77 58.4
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.4e-12 77.0 58 67.2
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.4e-12 77.0 80 56.2
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.4e-12 77.0 73 60.3
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 1.8e-12 76.6 58 67.2
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.8e-12 76.6 70 55.7
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 2.4e-12 76.3 58 67.2
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.4e-12 76.3 69 55.1
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 2.4e-12 76.3 77 54.5
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 3.1e-12 75.9 78 53.8
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 3.1e-12 75.9 70 57.1
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 4.1e-12 75.5 77 54.5
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 4.1e-12 75.5 67 61.2
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.1e-12 75.5 77 55.8
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 5.3e-12 75.1 53 69.8
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 5.3e-12 75.1 77 53.2
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 6.9e-12 74.7 68 61.8
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 6.9e-12 74.7 74 59.5
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 9.0e-12 74.3 77 50.6
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 1.2e-11 73.9 77 50.6
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 1.5e-11 73.6 52 69.2
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.5e-11 73.6 51 64.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 2.0e-11 73.2 67 61.2
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 2.0e-11 73.2 67 61.2
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.0e-11 73.2 67 59.7
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.0e-11 73.2 67 59.7
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 2.0e-11 73.2 70 57.1
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 2.6e-11 72.8 69 52.2
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 2.6e-11 72.8 75 53.3
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 4.5e-11 72.0 80 51.2
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 5.9e-11 71.6 84 52.4
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 5.9e-11 71.6 70 58.6
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 5.9e-11 71.6 77 50.6
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.3e-10 70.5 78 50.0
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.7e-10 70.1 76 50.0
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 2.9e-10 69.3 69 58.0
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 2.9e-10 69.3 77 49.4
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 5.0e-10 68.6 76 52.6
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 8.5e-10 67.8 83 48.2
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.1e-09 67.4 80 52.5
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 3.2e-09 65.9 82 52.4
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 7.2e-09 64.7 56 51.8
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 2.7e-08 62.8 58 56.9
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 3.6e-08 62.4 59 54.2
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 7.9e-08 61.2 42 59.5
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.0e-07 60.8 58 55.2
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.3e-07 59.7 35 68.6
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 8.8e-07 57.8 77 41.6
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 1.5e-06 57.0 57 49.1
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 2.5e-06 56.2 65 46.2


User provided reference genes

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