Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 1.1e-173 613.2 315 100.0
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 1.0e-134 483.8 287 83.6
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 2.0e-130 469.5 274 86.1
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 1.5e-122 443.4 287 77.4
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 2.3e-115 419.5 289 73.4
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 1.8e-112 409.8 284 72.5
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 5.4e-112 408.3 282 71.6
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 5.9e-111 404.8 282 70.2
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 2.3e-110 402.9 282 69.9
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 8.6e-110 401.0 285 70.9
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 1.9e-109 399.8 282 70.2
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 3.3e-109 399.1 285 69.8
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 3.3e-109 399.1 285 69.8
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 7.3e-109 397.9 285 68.4
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 4.7e-108 395.2 291 68.0
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 8.0e-108 394.4 283 68.9
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 1.4e-107 393.7 290 68.6
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.8e-107 393.3 283 68.6
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 2.3e-107 392.9 285 68.8
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.0e-107 392.5 285 68.8
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 4.0e-107 392.1 283 67.5
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 5.2e-107 391.7 283 68.6
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 1.5e-106 390.2 285 69.1
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.6e-106 389.4 274 70.8
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 4.4e-106 388.7 282 69.1
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 4.4e-106 388.7 282 68.8
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 9.8e-106 387.5 280 69.6
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 2.2e-105 386.3 285 66.7
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 2.2e-105 386.3 283 67.8
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 2.2e-105 386.3 274 68.6
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 2.9e-105 386.0 285 66.7
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 3.7e-105 385.6 283 68.2
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 4.9e-105 385.2 283 67.8
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 4.9e-105 385.2 282 68.1
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 1.8e-104 383.3 283 67.5
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 1.8e-104 383.3 281 70.1
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 5.4e-104 381.7 283 69.3
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 9.2e-104 380.9 286 67.8
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 1.2e-103 380.6 274 67.2
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.6e-103 380.2 283 66.8
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 2.7e-103 379.4 282 66.7
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 1.7e-102 376.7 281 67.6
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 1.7e-102 376.7 284 65.8
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 3.0e-102 375.9 282 65.2
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 3.9e-102 375.6 305 63.3
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 3.9e-102 375.6 281 65.5
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 5.0e-102 375.2 285 65.3
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 5.0e-102 375.2 285 64.9
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 6.6e-102 374.8 285 67.7
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 6.6e-102 374.8 281 65.1
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 1.9e-101 373.2 282 65.2
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 2.5e-101 372.9 284 64.8
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 5.6e-101 371.7 310 61.9
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 7.3e-101 371.3 282 63.8
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 9.5e-101 370.9 282 64.9
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 9.5e-101 370.9 273 68.1
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 3.6e-100 369.0 282 64.2
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 3.6e-100 369.0 284 65.1
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 3.6e-100 369.0 282 64.5
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 4.7e-100 368.6 281 67.3
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 4.7e-100 368.6 282 64.5
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 4.7e-100 368.6 274 67.5
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.1e-99 367.5 292 63.4
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 1.1e-99 367.5 280 65.0
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 5.2e-99 365.2 283 65.4
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 6.8e-99 364.8 280 65.0
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 1.5e-98 363.6 283 64.0
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 2.9e-97 359.4 288 61.8
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 2.9e-97 359.4 285 64.6
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 6.4e-97 358.2 311 59.2
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 8.3e-97 357.8 280 63.2
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.1e-96 357.5 272 65.8
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 3.2e-96 355.9 274 63.9
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 5.4e-96 355.1 285 64.2
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 2.7e-95 352.8 282 63.1
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 6.0e-95 351.7 264 68.2
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 7.8e-95 351.3 311 58.2
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 1.0e-94 350.9 283 62.2
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 2.3e-94 349.7 311 57.9
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 6.6e-94 348.2 328 57.9
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 6.6e-94 348.2 283 63.3
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 4.7e-92 342.0 286 61.5
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 4.4e-90 335.5 327 55.4
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.3e-89 334.0 306 58.2
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 4.9e-89 332.0 283 61.1
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 1.1e-88 330.9 287 57.5
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 1.4e-88 330.5 282 61.0
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 3.0e-86 322.8 289 58.5
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 1.5e-85 320.5 274 60.9
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 4.3e-85 318.9 274 60.6
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.2e-84 317.4 283 55.5
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.6e-84 317.0 288 59.7
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 1.6e-84 317.0 274 60.2
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 2.4e-83 313.2 309 54.7
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 4.0e-83 312.4 274 59.5
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 1.7e-81 307.0 285 55.1
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 3.8e-81 305.8 285 58.6
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 6.0e-79 298.5 247 65.6
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 6.0e-79 298.5 283 56.5
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 7.3e-77 291.6 242 60.3
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 2.0e-74 283.5 283 54.4
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 2.9e-73 279.6 235 62.1
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 5.6e-69 265.4 247 54.3
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 4.8e-68 262.3 249 53.8
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 5.4e-64 248.8 281 48.4
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 7.1e-64 248.4 173 72.8
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 9.3e-64 248.1 276 50.7
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 5.3e-59 232.3 225 54.2
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 2.6e-58 229.9 210 62.4
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 5.8e-58 228.8 284 47.9
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 1.0e-54 218.0 280 46.4
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 3.4e-50 203.0 166 62.0
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 8.7e-46 188.3 137 66.4
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 3.4e-42 176.4 177 50.8
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 5.9e-42 175.6 243 44.4
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 2.5e-40 170.2 108 76.9
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 5.1e-38 162.5 107 75.7
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.0e-33 148.3 81 90.1
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 1.9e-32 144.1 98 76.5
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 3.2e-32 143.3 302 33.1
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.0e-30 138.3 100 64.0
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 1.4e-30 137.9 101 74.3
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 3.7e-28 129.8 88 76.1
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.2e-18 98.2 55 83.6
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 3.5e-18 96.7 195 32.8
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 6.5e-17 92.4 202 32.7
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.6e-15 87.8 113 50.4
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 3.6e-15 86.7 61 70.5
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 5.9e-10 69.3 221 29.9
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 7.2e-08 62.4 73 46.6


User provided reference genes

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