Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 8.0e-200 700.3 367 100.0
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 4.5e-134 481.9 367 70.3
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.8e-130 469.9 367 69.2
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 2.3e-130 469.5 389 66.3
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 1.4e-108 397.1 341 60.7
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 6.3e-104 381.7 368 56.0
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 2.4e-103 379.8 369 55.6
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 1.3e-101 374.0 369 56.4
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 3.2e-100 369.4 365 54.2
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 3.2e-100 369.4 356 55.3
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 3.2e-100 369.4 369 52.8
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 7.2e-100 368.2 344 54.9
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.2e-100 368.2 344 54.9
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 9.4e-100 367.9 344 54.9
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 9.4e-100 367.9 344 54.9
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 1.2e-99 367.5 334 56.3
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 2.7e-99 366.3 371 55.0
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.9e-99 364.8 344 54.7
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 1.4e-98 364.0 342 56.7
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 1.4e-98 364.0 348 55.2
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 8.8e-98 361.3 344 54.1
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 8.8e-98 361.3 370 52.4
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 2.0e-97 360.1 357 54.9
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 2.6e-97 359.8 352 54.5
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 3.3e-97 359.4 369 52.8
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 4.4e-97 359.0 345 55.1
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 5.7e-97 358.6 352 55.4
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 2.8e-96 356.3 347 52.7
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 8.2e-96 354.8 345 53.9
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 8.2e-96 354.8 371 52.3
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 1.8e-95 353.6 368 52.7
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 2.4e-95 353.2 370 51.6
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 3.1e-95 352.8 368 52.7
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 4.1e-95 352.4 341 54.3
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 9.1e-95 351.3 340 54.7
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 4.5e-94 349.0 368 51.4
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 4.5e-94 349.0 348 55.7
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 5.9e-94 348.6 352 53.1
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 7.7e-94 348.2 348 52.9
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 7.7e-94 348.2 349 53.3
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.0e-93 347.8 370 50.5
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 1.3e-93 347.4 368 52.4
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.3e-93 347.4 354 52.0
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 2.2e-93 346.7 368 50.8
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 3.8e-93 345.9 349 53.6
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 5.0e-93 345.5 347 52.7
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 6.5e-93 345.1 352 52.0
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 1.1e-92 344.4 350 52.3
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.5e-92 343.2 355 51.0
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 3.2e-92 342.8 342 54.1
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 5.5e-92 342.0 433 46.7
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 7.2e-92 341.7 355 51.8
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 9.4e-92 341.3 350 51.4
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 1.6e-91 340.5 347 51.9
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 2.1e-91 340.1 376 51.9
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 4.7e-91 339.0 352 53.1
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 6.1e-91 338.6 365 50.4
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 1.0e-90 337.8 348 53.7
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.0e-90 337.8 344 52.6
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 1.8e-90 337.0 344 52.3
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 5.2e-90 335.5 326 54.6
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.1e-89 334.3 336 53.9
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 2.6e-89 333.2 375 49.6
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 4.4e-89 332.4 333 57.1
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 9.7e-89 331.3 391 47.6
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 6.3e-88 328.6 337 52.8
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 2.6e-86 323.2 360 48.6
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 3.5e-86 322.8 342 50.6
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 7.7e-86 321.6 411 45.7
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 5.0e-85 318.9 368 47.6
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 1.9e-84 317.0 368 48.6
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 2.5e-84 316.6 366 48.6
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 3.2e-84 316.2 367 48.0
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 3.2e-84 316.2 352 48.3
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 4.2e-84 315.8 370 46.8
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 5.5e-84 315.5 366 47.0
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 9.4e-84 314.7 369 49.3
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 8.0e-83 311.6 367 47.7
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.3e-82 310.1 367 47.4
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 3.0e-82 309.7 342 50.6
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 4.0e-82 309.3 367 48.2
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 4.4e-81 305.8 306 54.2
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 9.7e-81 304.7 367 46.9
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 9.7e-81 304.7 377 47.5
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 8.2e-80 301.6 370 46.2
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.4e-79 300.8 340 49.1
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 1.4e-79 300.8 343 48.7
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 9.1e-79 298.1 376 45.5
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 1.6e-78 297.4 371 47.2
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 4.5e-78 295.8 371 46.4
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.8e-77 292.7 368 47.0
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 8.5e-77 291.6 294 53.7
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 8.5e-77 291.6 374 46.0
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 2.5e-76 290.0 370 44.9
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 7.2e-76 288.5 355 45.6
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 2.7e-75 286.6 370 44.3
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 6.1e-75 285.4 352 43.5
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 6.8e-74 282.0 293 49.8
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 3.4e-73 279.6 366 44.0
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 9.8e-73 278.1 288 52.4
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.7e-72 277.3 370 44.1
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 7.0e-71 271.9 371 43.9
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 2.9e-69 266.5 366 44.3
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 2.9e-69 266.5 338 46.2
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 2.9e-69 266.5 294 51.0
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 2.9e-69 266.5 334 45.8
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 5.0e-69 265.8 302 50.3
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 5.5e-68 262.3 337 45.7
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 9.5e-68 261.5 300 49.7
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 3.0e-66 256.5 342 44.2
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 3.4e-65 253.1 288 50.3
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 1.3e-64 251.1 349 40.4
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 9.2e-63 245.0 355 39.4
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.6e-59 233.0 338 41.4
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.4e-58 231.1 340 41.2
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 7.5e-57 225.3 283 45.6
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 9.8e-57 224.9 343 39.9
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 7.8e-54 215.3 249 48.6
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 2.5e-52 210.3 345 39.4
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 3.6e-51 206.5 238 49.6
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 6.2e-51 205.7 345 37.7
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 6.8e-50 202.2 216 51.9
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 1.1e-47 194.9 244 45.9
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.2e-46 191.4 270 45.6
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 6.6e-45 185.7 253 45.1
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 4.4e-41 172.9 351 31.9
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 4.9e-40 169.5 294 39.1
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 4.9e-40 169.5 310 36.5
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 1.9e-39 167.5 122 67.2
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 5.6e-36 156.0 247 42.5
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.5e-28 131.3 422 25.6
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 1.6e-27 127.9 176 44.9
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 2.2e-24 117.5 127 45.7
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 3.8e-24 116.7 351 29.3
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 1.9e-23 114.4 173 46.8
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 2.4e-18 97.4 163 33.1
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 7.4e-12 75.9 196 28.1
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 1.3e-08 65.1 63 47.6
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 1.4e-07 61.6 51 52.9
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 1.9e-07 61.2 51 52.9
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 5.5e-07 59.7 210 24.8


User provided reference genes

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